Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.81■□□□□ 0.28
SOX3P41225 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SOX3P41225 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.81■□□□□ 0.28
SOX3P41225 AC092119.3-201ENST00000612618 583 ntBASIC16.81■□□□□ 0.28
SOX3P41225 NPAP1P7-201ENST00000613027 823 ntBASIC16.81■□□□□ 0.28
SOX3P41225 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SOX3P41225 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
SOX3P41225 AL024508.2-201ENST00000607749 1894 ntBASIC16.81■□□□□ 0.28
SOX3P41225 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.81■□□□□ 0.28
SOX3P41225 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.81■□□□□ 0.28
SOX3P41225 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX3P41225 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SOX3P41225 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SOX3P41225 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SOX3P41225 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.8■□□□□ 0.28
SOX3P41225 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 CHCHD2P8-201ENST00000429873 447 ntBASIC16.8■□□□□ 0.28
SOX3P41225 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.8■□□□□ 0.28
SOX3P41225 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.8■□□□□ 0.28
SOX3P41225 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.8■□□□□ 0.28
SOX3P41225 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SOX3P41225 KRT18P56-201ENST00000507275 550 ntBASIC16.8■□□□□ 0.28
SOX3P41225 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.8■□□□□ 0.28
SOX3P41225 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.8■□□□□ 0.28
SOX3P41225 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.8■□□□□ 0.28
SOX3P41225 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SOX3P41225 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SOX3P41225 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SOX3P41225 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX3P41225 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.8■□□□□ 0.28
SOX3P41225 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
SOX3P41225 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.79■□□□□ 0.28
SOX3P41225 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.79■□□□□ 0.28
SOX3P41225 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SOX3P41225 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.79■□□□□ 0.28
SOX3P41225 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.79■□□□□ 0.28
SOX3P41225 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 PCDHA12-202ENST00000613593 2588 ntBASIC16.79■□□□□ 0.28
SOX3P41225 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
SOX3P41225 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.79■□□□□ 0.28
SOX3P41225 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.79■□□□□ 0.28
SOX3P41225 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SOX3P41225 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.79■□□□□ 0.28
SOX3P41225 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
SOX3P41225 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SOX3P41225 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SOX3P41225 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.79■□□□□ 0.28
SOX3P41225 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX3P41225 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.79■□□□□ 0.28
SOX3P41225 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SOX3P41225 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.78■□□□□ 0.28
SOX3P41225 AL353692.3-201ENST00000407031 1396 ntBASIC16.78■□□□□ 0.28
SOX3P41225 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.78■□□□□ 0.28
SOX3P41225 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SOX3P41225 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms