Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 LINC00304-203ENST00000565008 1864 ntBASIC17.07■□□□□ 0.32
MSX2P35548 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.07■□□□□ 0.32
MSX2P35548 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
MSX2P35548 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
MSX2P35548 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
MSX2P35548 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
MSX2P35548 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
MSX2P35548 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
MSX2P35548 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.06■□□□□ 0.32
MSX2P35548 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.06■□□□□ 0.32
MSX2P35548 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
MSX2P35548 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.06■□□□□ 0.32
MSX2P35548 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.06■□□□□ 0.32
MSX2P35548 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.06■□□□□ 0.32
MSX2P35548 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.06■□□□□ 0.32
MSX2P35548 AL353708.3-201ENST00000610272 989 ntBASIC17.06■□□□□ 0.32
MSX2P35548 AC110285.5-201ENST00000611501 352 ntBASIC17.06■□□□□ 0.32
MSX2P35548 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSX2P35548 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 AL024508.2-201ENST00000607749 1894 ntBASIC17.05■□□□□ 0.32
MSX2P35548 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
MSX2P35548 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.05■□□□□ 0.32
MSX2P35548 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
MSX2P35548 AC132938.6-201ENST00000623828 1655 ntBASIC17.05■□□□□ 0.32
MSX2P35548 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
MSX2P35548 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
MSX2P35548 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
MSX2P35548 B3GAT3P1-201ENST00000471720 806 ntBASIC17.05■□□□□ 0.32
MSX2P35548 AC026366.1-201ENST00000488803 879 ntBASIC17.05■□□□□ 0.32
MSX2P35548 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
MSX2P35548 MIR6786-201ENST00000616843 113 ntBASIC17.05■□□□□ 0.32
MSX2P35548 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.05■□□□□ 0.32
MSX2P35548 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSX2P35548 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.05■□□□□ 0.32
MSX2P35548 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
MSX2P35548 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
MSX2P35548 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX2P35548 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.04■□□□□ 0.32
MSX2P35548 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.04■□□□□ 0.32
MSX2P35548 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
MSX2P35548 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
MSX2P35548 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
MSX2P35548 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
MSX2P35548 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
MSX2P35548 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX2P35548 AC090192.1-201ENST00000517740 490 ntBASIC17.04■□□□□ 0.32
MSX2P35548 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX2P35548 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.04■□□□□ 0.32
MSX2P35548 AC142086.2-201ENST00000569753 217 ntBASIC17.04■□□□□ 0.32
MSX2P35548 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms