Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFC4P35249 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
RFC4P35249 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
RFC4P35249 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFC4P35249 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFC4P35249 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFC4P35249 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFC4P35249 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFC4P35249 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.3■■□□□ 1.16
RFC4P35249 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RFC4P35249 PC-214ENST00000628663 1470 ntTSL 5 BASIC22.3■■□□□ 1.16
RFC4P35249 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
RFC4P35249 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFC4P35249 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC22.3■■□□□ 1.16
RFC4P35249 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC22.3■■□□□ 1.16
RFC4P35249 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC22.3■■□□□ 1.16
RFC4P35249 RIN3-211ENST00000557762 517 ntTSL 3 BASIC22.3■■□□□ 1.16
RFC4P35249 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC22.3■■□□□ 1.16
RFC4P35249 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC22.3■■□□□ 1.16
RFC4P35249 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC22.3■■□□□ 1.16
RFC4P35249 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
RFC4P35249 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
RFC4P35249 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
RFC4P35249 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RFC4P35249 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC22.3■■□□□ 1.16
RFC4P35249 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RFC4P35249 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC22.3■■□□□ 1.16
RFC4P35249 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 AL139400.1-201ENST00000366220 510 ntBASIC22.29■■□□□ 1.16
RFC4P35249 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC22.29■■□□□ 1.16
RFC4P35249 AC074386.1-202ENST00000463561 864 ntBASIC22.29■■□□□ 1.16
RFC4P35249 DUTP2-201ENST00000519164 463 ntBASIC22.29■■□□□ 1.16
RFC4P35249 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC22.29■■□□□ 1.16
RFC4P35249 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC22.29■■□□□ 1.16
RFC4P35249 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC22.29■■□□□ 1.16
RFC4P35249 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
RFC4P35249 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.29■■□□□ 1.16
RFC4P35249 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RFC4P35249 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC22.28■■□□□ 1.16
RFC4P35249 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC22.28■■□□□ 1.16
RFC4P35249 PHGDH-209ENST00000641074 1780 ntBASIC22.28■■□□□ 1.16
RFC4P35249 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC22.28■■□□□ 1.16
RFC4P35249 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 PTCHD3P3-201ENST00000403073 906 ntBASIC22.28■■□□□ 1.16
RFC4P35249 RHOQP3-201ENST00000437982 621 ntBASIC22.28■■□□□ 1.16
RFC4P35249 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC22.28■■□□□ 1.16
RFC4P35249 LHX6-205ENST00000464484 666 ntTSL 2 BASIC22.28■■□□□ 1.16
RFC4P35249 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
RFC4P35249 RNF34-208ENST00000555076 593 ntTSL 3 BASIC22.28■■□□□ 1.16
RFC4P35249 AC004449.1-201ENST00000564240 433 ntBASIC22.28■■□□□ 1.16
RFC4P35249 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC22.28■■□□□ 1.16
RFC4P35249 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
RFC4P35249 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 AC025580.3-201ENST00000617932 1424 ntBASIC22.28■■□□□ 1.16
RFC4P35249 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC22.28■■□□□ 1.16
RFC4P35249 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
RFC4P35249 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC22.28■■□□□ 1.16
RFC4P35249 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RFC4P35249 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC22.28■■□□□ 1.16
RFC4P35249 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
RFC4P35249 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC22.27■■□□□ 1.16
RFC4P35249 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC22.27■■□□□ 1.16
RFC4P35249 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC22.27■■□□□ 1.16
RFC4P35249 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC22.27■■□□□ 1.16
RFC4P35249 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RFC4P35249 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RFC4P35249 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
RFC4P35249 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RFC4P35249 DDT-204ENST00000404092 805 ntTSL 3 BASIC22.27■■□□□ 1.16
RFC4P35249 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC22.27■■□□□ 1.16
RFC4P35249 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC22.27■■□□□ 1.16
RFC4P35249 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
RFC4P35249 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC22.27■■□□□ 1.16
RFC4P35249 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
RFC4P35249 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
RFC4P35249 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
RFC4P35249 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
RFC4P35249 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC22.26■■□□□ 1.15
RFC4P35249 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
RFC4P35249 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms