Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SHMT2P34897 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.47■□□□□ 0.39
SHMT2P34897 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SHMT2P34897 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.47■□□□□ 0.39
SHMT2P34897 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.47■□□□□ 0.39
SHMT2P34897 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SHMT2P34897 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.47■□□□□ 0.39
SHMT2P34897 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
SHMT2P34897 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SHMT2P34897 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SHMT2P34897 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.47■□□□□ 0.39
SHMT2P34897 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.47■□□□□ 0.39
SHMT2P34897 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 AC011840.4-201ENST00000578471 627 ntBASIC17.47■□□□□ 0.39
SHMT2P34897 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SHMT2P34897 MIR3180-1-201ENST00000580374 94 ntBASIC17.47■□□□□ 0.39
SHMT2P34897 MIR3180-3-201ENST00000584616 94 ntBASIC17.47■□□□□ 0.39
SHMT2P34897 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.47■□□□□ 0.39
SHMT2P34897 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.47■□□□□ 0.39
SHMT2P34897 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.47■□□□□ 0.39
SHMT2P34897 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.47■□□□□ 0.39
SHMT2P34897 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.47■□□□□ 0.39
SHMT2P34897 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
SHMT2P34897 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.46■□□□□ 0.39
SHMT2P34897 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 AL096828.2-201ENST00000567259 1965 ntBASIC17.46■□□□□ 0.39
SHMT2P34897 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.46■□□□□ 0.39
SHMT2P34897 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.46■□□□□ 0.39
SHMT2P34897 AC132938.6-201ENST00000623828 1655 ntBASIC17.46■□□□□ 0.39
SHMT2P34897 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.46■□□□□ 0.39
SHMT2P34897 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.46■□□□□ 0.39
SHMT2P34897 LINC00265-3P-201ENST00000447588 903 ntBASIC17.46■□□□□ 0.39
SHMT2P34897 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.46■□□□□ 0.39
SHMT2P34897 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.46■□□□□ 0.39
SHMT2P34897 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
SHMT2P34897 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SHMT2P34897 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
SHMT2P34897 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.39
SHMT2P34897 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHMT2P34897 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
SHMT2P34897 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
SHMT2P34897 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.45■□□□□ 0.38
SHMT2P34897 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.45■□□□□ 0.38
SHMT2P34897 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SHMT2P34897 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.45■□□□□ 0.38
SHMT2P34897 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
SHMT2P34897 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SHMT2P34897 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SHMT2P34897 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
SHMT2P34897 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.45■□□□□ 0.38
SHMT2P34897 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.45■□□□□ 0.38
SHMT2P34897 AC246785.2-201ENST00000432512 513 ntBASIC17.45■□□□□ 0.38
SHMT2P34897 TOB2P1-201ENST00000469761 992 ntBASIC17.45■□□□□ 0.38
SHMT2P34897 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SHMT2P34897 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.45■□□□□ 0.38
SHMT2P34897 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.45■□□□□ 0.38
SHMT2P34897 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.45■□□□□ 0.38
SHMT2P34897 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms