Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A1P12109 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A1P12109 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
COL6A1P12109 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A1P12109 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A1P12109 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.61■□□□□ 0.73
COL6A1P12109 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A1P12109 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A1P12109 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.6■□□□□ 0.73
COL6A1P12109 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A1P12109 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A1P12109 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.6■□□□□ 0.73
COL6A1P12109 COX5BP2-201ENST00000392354 334 ntBASIC19.6■□□□□ 0.73
COL6A1P12109 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A1P12109 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.6■□□□□ 0.73
COL6A1P12109 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.6■□□□□ 0.73
COL6A1P12109 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.6■□□□□ 0.73
COL6A1P12109 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.6■□□□□ 0.73
COL6A1P12109 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A1P12109 Z92544.3-201ENST00000624747 417 ntBASIC19.6■□□□□ 0.73
COL6A1P12109 AF228730.6-201ENST00000641497 218 ntBASIC19.6■□□□□ 0.73
COL6A1P12109 AC084121.3-201ENST00000641716 218 ntBASIC19.6■□□□□ 0.73
COL6A1P12109 AC105233.6-201ENST00000642093 218 ntBASIC19.6■□□□□ 0.73
COL6A1P12109 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A1P12109 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A1P12109 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A1P12109 AC025580.3-201ENST00000617932 1424 ntBASIC19.59■□□□□ 0.73
COL6A1P12109 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL6A1P12109 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
COL6A1P12109 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A1P12109 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.59■□□□□ 0.73
COL6A1P12109 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A1P12109 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL6A1P12109 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A1P12109 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL6A1P12109 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.59■□□□□ 0.73
COL6A1P12109 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.59■□□□□ 0.73
COL6A1P12109 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.59■□□□□ 0.73
COL6A1P12109 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.59■□□□□ 0.73
COL6A1P12109 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.59■□□□□ 0.73
COL6A1P12109 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A1P12109 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.59■□□□□ 0.73
COL6A1P12109 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A1P12109 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A1P12109 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A1P12109 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A1P12109 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A1P12109 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A1P12109 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A1P12109 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.58■□□□□ 0.73
COL6A1P12109 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A1P12109 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
COL6A1P12109 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
COL6A1P12109 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A1P12109 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.58■□□□□ 0.73
COL6A1P12109 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A1P12109 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A1P12109 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A1P12109 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
COL6A1P12109 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
COL6A1P12109 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.58■□□□□ 0.72
COL6A1P12109 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A1P12109 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A1P12109 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A1P12109 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.58■□□□□ 0.72
COL6A1P12109 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.58■□□□□ 0.72
COL6A1P12109 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.58■□□□□ 0.72
COL6A1P12109 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.58■□□□□ 0.72
COL6A1P12109 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC19.58■□□□□ 0.72
COL6A1P12109 AL390955.2-201ENST00000603032 514 ntBASIC19.58■□□□□ 0.72
COL6A1P12109 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
COL6A1P12109 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.72
COL6A1P12109 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A1P12109 AL121761.2-201ENST00000598007 1648 ntBASIC19.58■□□□□ 0.72
COL6A1P12109 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
COL6A1P12109 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A1P12109 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A1P12109 AL049757.1-201ENST00000616842 1596 ntBASIC19.57■□□□□ 0.72
COL6A1P12109 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
COL6A1P12109 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
COL6A1P12109 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A1P12109 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms