Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.69■□□□□ 0.74
TPM1P09493 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM1P09493 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM1P09493 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM1P09493 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.69■□□□□ 0.74
TPM1P09493 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM1P09493 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.69■□□□□ 0.74
TPM1P09493 MIR3180-4-201ENST00000582223 153 ntBASIC19.69■□□□□ 0.74
TPM1P09493 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM1P09493 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM1P09493 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.69■□□□□ 0.74
TPM1P09493 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.69■□□□□ 0.74
TPM1P09493 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TPM1P09493 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
TPM1P09493 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TPM1P09493 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.69■□□□□ 0.74
TPM1P09493 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.69■□□□□ 0.74
TPM1P09493 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TPM1P09493 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TPM1P09493 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TPM1P09493 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM1P09493 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM1P09493 AC133963.1-201ENST00000504166 1679 ntBASIC19.68■□□□□ 0.74
TPM1P09493 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM1P09493 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
TPM1P09493 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM1P09493 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM1P09493 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.68■□□□□ 0.74
TPM1P09493 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM1P09493 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM1P09493 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.68■□□□□ 0.74
TPM1P09493 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.68■□□□□ 0.74
TPM1P09493 DUTP2-201ENST00000519164 463 ntBASIC19.68■□□□□ 0.74
TPM1P09493 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TPM1P09493 AC022898.2-201ENST00000616822 1312 ntBASIC19.68■□□□□ 0.74
TPM1P09493 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TPM1P09493 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
TPM1P09493 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
TPM1P09493 AC011676.5-201ENST00000624864 2660 ntBASIC19.68■□□□□ 0.74
TPM1P09493 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
TPM1P09493 AL139384.1-201ENST00000612143 3047 ntBASIC19.68■□□□□ 0.74
TPM1P09493 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM1P09493 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
TPM1P09493 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
TPM1P09493 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM1P09493 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.67■□□□□ 0.74
TPM1P09493 AL024508.2-201ENST00000607749 1894 ntBASIC19.67■□□□□ 0.74
TPM1P09493 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.67■□□□□ 0.74
TPM1P09493 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM1P09493 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM1P09493 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM1P09493 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TPM1P09493 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM1P09493 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
TPM1P09493 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.67■□□□□ 0.74
TPM1P09493 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.67■□□□□ 0.74
TPM1P09493 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM1P09493 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.67■□□□□ 0.74
TPM1P09493 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
TPM1P09493 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM1P09493 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.67■□□□□ 0.74
TPM1P09493 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TPM1P09493 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM1P09493 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TPM1P09493 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TPM1P09493 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.67■□□□□ 0.74
TPM1P09493 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TPM1P09493 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
TPM1P09493 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
TPM1P09493 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
TPM1P09493 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.66■□□□□ 0.74
TPM1P09493 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.66■□□□□ 0.74
TPM1P09493 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms