Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.08■□□□□ 0.17
HLA-DPB1P04440 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DPB1P04440 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DPB1P04440 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 BX088651.1-201ENST00000540551 451 ntBASIC16.08■□□□□ 0.16
HLA-DPB1P04440 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 AC008622.2-201ENST00000617006 1229 ntBASIC16.08■□□□□ 0.16
HLA-DPB1P04440 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DPB1P04440 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 MIR564-202ENST00000385049 94 ntBASIC16.07■□□□□ 0.16
HLA-DPB1P04440 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 AC093010.1-201ENST00000473625 1624 ntBASIC16.07■□□□□ 0.16
HLA-DPB1P04440 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 AL355312.1-201ENST00000407115 2176 ntBASIC16.07■□□□□ 0.16
HLA-DPB1P04440 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DPB1P04440 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 C2orf69P3-201ENST00000565542 1120 ntBASIC16.06■□□□□ 0.16
HLA-DPB1P04440 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DPB1P04440 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 AC034236.2-201ENST00000606662 1610 ntBASIC16.05■□□□□ 0.16
HLA-DPB1P04440 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms