Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CLDN9O95484 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 AC009949.1-201ENST00000623048 1830 ntBASIC17.28■□□□□ 0.36
CLDN9O95484 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.28■□□□□ 0.36
CLDN9O95484 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CLDN9O95484 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CLDN9O95484 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 AK4P3-201ENST00000418260 669 ntBASIC17.28■□□□□ 0.36
CLDN9O95484 TSPY12P-201ENST00000421279 868 ntBASIC17.28■□□□□ 0.36
CLDN9O95484 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.28■□□□□ 0.36
CLDN9O95484 AP003733.1-201ENST00000491725 852 ntBASIC17.28■□□□□ 0.36
CLDN9O95484 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.28■□□□□ 0.36
CLDN9O95484 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.28■□□□□ 0.36
CLDN9O95484 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
CLDN9O95484 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.28■□□□□ 0.36
CLDN9O95484 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.28■□□□□ 0.36
CLDN9O95484 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
CLDN9O95484 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.28■□□□□ 0.36
CLDN9O95484 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
CLDN9O95484 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.28■□□□□ 0.36
CLDN9O95484 AC133963.1-201ENST00000504166 1679 ntBASIC17.28■□□□□ 0.36
CLDN9O95484 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.28■□□□□ 0.36
CLDN9O95484 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
CLDN9O95484 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN9O95484 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.28■□□□□ 0.36
CLDN9O95484 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CLDN9O95484 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.27■□□□□ 0.36
CLDN9O95484 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.27■□□□□ 0.36
CLDN9O95484 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CLDN9O95484 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CLDN9O95484 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 MIR662-201ENST00000384847 95 ntBASIC17.27■□□□□ 0.36
CLDN9O95484 IGHGP-201ENST00000390555 1178 ntBASIC17.27■□□□□ 0.36
CLDN9O95484 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.27■□□□□ 0.36
CLDN9O95484 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.27■□□□□ 0.36
CLDN9O95484 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.27■□□□□ 0.36
CLDN9O95484 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.27■□□□□ 0.36
CLDN9O95484 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.27■□□□□ 0.36
CLDN9O95484 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.27■□□□□ 0.36
CLDN9O95484 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.27■□□□□ 0.36
CLDN9O95484 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.27■□□□□ 0.36
CLDN9O95484 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.27■□□□□ 0.36
CLDN9O95484 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.27■□□□□ 0.36
CLDN9O95484 AC006011.2-201ENST00000621313 1158 ntBASIC17.27■□□□□ 0.36
CLDN9O95484 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CLDN9O95484 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN9O95484 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.27■□□□□ 0.35
CLDN9O95484 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLDN9O95484 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.27■□□□□ 0.35
CLDN9O95484 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CLDN9O95484 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
CLDN9O95484 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLDN9O95484 KRT8P47-201ENST00000604727 1398 ntBASIC17.27■□□□□ 0.35
CLDN9O95484 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.26■□□□□ 0.35
CLDN9O95484 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.26■□□□□ 0.35
CLDN9O95484 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms