Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 HBZP1-201ENST00000354915 429 ntBASIC19.29■□□□□ 0.68
RNF40O75150 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.29■□□□□ 0.68
RNF40O75150 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF40O75150 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF40O75150 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.29■□□□□ 0.68
RNF40O75150 AL691432.3-201ENST00000621860 400 ntBASIC19.29■□□□□ 0.68
RNF40O75150 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF40O75150 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.29■□□□□ 0.68
RNF40O75150 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RNF40O75150 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.29■□□□□ 0.68
RNF40O75150 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF40O75150 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
RNF40O75150 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
RNF40O75150 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF40O75150 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF40O75150 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF40O75150 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF40O75150 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF40O75150 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF40O75150 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RNF40O75150 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF40O75150 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
RNF40O75150 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
RNF40O75150 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF40O75150 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RNF40O75150 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
RNF40O75150 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF40O75150 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF40O75150 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
RNF40O75150 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.27■□□□□ 0.68
RNF40O75150 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF40O75150 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF40O75150 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
RNF40O75150 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.27■□□□□ 0.68
RNF40O75150 AL645929.1-201ENST00000420084 975 ntBASIC19.27■□□□□ 0.68
RNF40O75150 TSPY23P-201ENST00000440136 739 ntBASIC19.27■□□□□ 0.68
RNF40O75150 RASA4DP-201ENST00000460726 1199 ntBASIC19.27■□□□□ 0.68
RNF40O75150 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.27■□□□□ 0.68
RNF40O75150 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.27■□□□□ 0.68
RNF40O75150 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.27■□□□□ 0.68
RNF40O75150 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 AC092119.3-201ENST00000612618 583 ntBASIC19.27■□□□□ 0.68
RNF40O75150 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
RNF40O75150 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF40O75150 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF40O75150 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF40O75150 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
RNF40O75150 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF40O75150 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF40O75150 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.26■□□□□ 0.67
RNF40O75150 AC022211.2-201ENST00000585075 2527 ntBASIC19.26■□□□□ 0.67
RNF40O75150 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms