Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX4O60224 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.24■□□□□ 0.19
SSX4O60224 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX4O60224 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.24■□□□□ 0.19
SSX4O60224 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX4O60224 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.24■□□□□ 0.19
SSX4O60224 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX4O60224 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
SSX4O60224 AC104417.2-201ENST00000562989 1793 ntBASIC16.23■□□□□ 0.19
SSX4O60224 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.23■□□□□ 0.19
SSX4O60224 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SSX4O60224 FEM1AP3-201ENST00000403722 1741 ntBASIC16.23■□□□□ 0.19
SSX4O60224 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 AC008741.2-201ENST00000612792 3115 ntBASIC16.23■□□□□ 0.19
SSX4O60224 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX4O60224 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX4O60224 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX4O60224 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX4O60224 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.23■□□□□ 0.19
SSX4O60224 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX4O60224 AC011558.1-201ENST00000623459 338 ntBASIC16.23■□□□□ 0.19
SSX4O60224 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX4O60224 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.23■□□□□ 0.19
SSX4O60224 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX4O60224 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
SSX4O60224 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.23■□□□□ 0.19
SSX4O60224 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SSX4O60224 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
SSX4O60224 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SSX4O60224 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.22■□□□□ 0.19
SSX4O60224 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.22■□□□□ 0.19
SSX4O60224 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.22■□□□□ 0.19
SSX4O60224 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.22■□□□□ 0.19
SSX4O60224 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.22■□□□□ 0.19
SSX4O60224 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
SSX4O60224 AL031432.5-201ENST00000641059 760 ntBASIC16.22■□□□□ 0.19
SSX4O60224 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.22■□□□□ 0.19
SSX4O60224 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SSX4O60224 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX4O60224 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SSX4O60224 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.21■□□□□ 0.19
SSX4O60224 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.21■□□□□ 0.19
SSX4O60224 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.21■□□□□ 0.19
SSX4O60224 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SSX4O60224 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SSX4O60224 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SSX4O60224 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.21■□□□□ 0.19
SSX4O60224 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.21■□□□□ 0.19
SSX4O60224 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SSX4O60224 AL031133.1-201ENST00000406807 723 ntBASIC16.21■□□□□ 0.19
SSX4O60224 CA15P1-201ENST00000481698 905 ntBASIC16.21■□□□□ 0.19
SSX4O60224 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.21■□□□□ 0.19
SSX4O60224 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.21■□□□□ 0.19
SSX4O60224 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.21■□□□□ 0.19
SSX4O60224 CKBP1-201ENST00000565489 1086 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms