Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC15.82■□□□□ 0.12
SGCEO43556 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SGCEO43556 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC15.82■□□□□ 0.12
SGCEO43556 AL359075.1-203ENST00000462729 1002 ntBASIC15.82■□□□□ 0.12
SGCEO43556 AC113404.2-201ENST00000507884 177 ntBASIC15.82■□□□□ 0.12
SGCEO43556 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.82■□□□□ 0.12
SGCEO43556 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.82■□□□□ 0.12
SGCEO43556 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SGCEO43556 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.82■□□□□ 0.12
SGCEO43556 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
SGCEO43556 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SGCEO43556 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SGCEO43556 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
SGCEO43556 AC068880.1-201ENST00000507289 2297 ntBASIC15.82■□□□□ 0.12
SGCEO43556 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC15.82■□□□□ 0.12
SGCEO43556 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SGCEO43556 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
SGCEO43556 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
SGCEO43556 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
SGCEO43556 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
SGCEO43556 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
SGCEO43556 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.81■□□□□ 0.12
SGCEO43556 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
SGCEO43556 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.81■□□□□ 0.12
SGCEO43556 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.81■□□□□ 0.12
SGCEO43556 HLA-F-220ENST00000434407 884 ntBASIC15.81■□□□□ 0.12
SGCEO43556 KRT18P48-201ENST00000434763 852 ntBASIC15.81■□□□□ 0.12
SGCEO43556 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SGCEO43556 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.81■□□□□ 0.12
SGCEO43556 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC15.81■□□□□ 0.12
SGCEO43556 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC15.81■□□□□ 0.12
SGCEO43556 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC15.81■□□□□ 0.12
SGCEO43556 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.81■□□□□ 0.12
SGCEO43556 RN7SL850P-201ENST00000579959 291 ntBASIC15.81■□□□□ 0.12
SGCEO43556 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC15.81■□□□□ 0.12
SGCEO43556 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SGCEO43556 RBM42-202ENST00000586618 771 ntTSL 3 BASIC15.81■□□□□ 0.12
SGCEO43556 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.81■□□□□ 0.12
SGCEO43556 TK1-205ENST00000590862 642 ntTSL 3 BASIC15.81■□□□□ 0.12
SGCEO43556 AL513477.1-201ENST00000602865 2407 ntBASIC15.81■□□□□ 0.12
SGCEO43556 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
SGCEO43556 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
SGCEO43556 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 AC132938.6-201ENST00000623828 1655 ntBASIC15.81■□□□□ 0.12
SGCEO43556 AC046158.3-201ENST00000624947 2558 ntBASIC15.81■□□□□ 0.12
SGCEO43556 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC15.81■□□□□ 0.12
SGCEO43556 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SGCEO43556 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SGCEO43556 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SGCEO43556 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SGCEO43556 LINC00602-201ENST00000629776 2065 ntBASIC15.8■□□□□ 0.12
SGCEO43556 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SGCEO43556 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SGCEO43556 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC15.8■□□□□ 0.12
SGCEO43556 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SGCEO43556 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SGCEO43556 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SGCEO43556 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SGCEO43556 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SGCEO43556 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SGCEO43556 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.8■□□□□ 0.12
SGCEO43556 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SGCEO43556 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SGCEO43556 COPE-203ENST00000351079 907 ntTSL 2 BASIC15.8■□□□□ 0.12
SGCEO43556 RCN1P1-201ENST00000400413 996 ntBASIC15.8■□□□□ 0.12
SGCEO43556 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SGCEO43556 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.8■□□□□ 0.12
SGCEO43556 AC104076.2-201ENST00000448912 469 ntBASIC15.8■□□□□ 0.12
SGCEO43556 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.8■□□□□ 0.12
SGCEO43556 AC092597.1-201ENST00000487352 616 ntBASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms