Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.78■□□□□ 0.44
PHGDHO43175 AC087499.1-201ENST00000418141 1075 ntBASIC17.78■□□□□ 0.44
PHGDHO43175 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.78■□□□□ 0.44
PHGDHO43175 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PHGDHO43175 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.78■□□□□ 0.44
PHGDHO43175 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.78■□□□□ 0.44
PHGDHO43175 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.78■□□□□ 0.44
PHGDHO43175 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PHGDHO43175 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PHGDHO43175 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
PHGDHO43175 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PHGDHO43175 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.77■□□□□ 0.44
PHGDHO43175 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
PHGDHO43175 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.77■□□□□ 0.44
PHGDHO43175 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
PHGDHO43175 AC009949.1-201ENST00000623048 1830 ntBASIC17.77■□□□□ 0.44
PHGDHO43175 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.77■□□□□ 0.44
PHGDHO43175 PCDHA12-202ENST00000613593 2588 ntBASIC17.77■□□□□ 0.44
PHGDHO43175 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
PHGDHO43175 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.77■□□□□ 0.44
PHGDHO43175 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
PHGDHO43175 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.77■□□□□ 0.44
PHGDHO43175 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.77■□□□□ 0.44
PHGDHO43175 AC145285.6-201ENST00000604632 637 ntBASIC17.77■□□□□ 0.44
PHGDHO43175 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.77■□□□□ 0.44
PHGDHO43175 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
PHGDHO43175 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.77■□□□□ 0.44
PHGDHO43175 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PHGDHO43175 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PHGDHO43175 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PHGDHO43175 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.77■□□□□ 0.43
PHGDHO43175 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PHGDHO43175 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PHGDHO43175 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.43
PHGDHO43175 AC133963.1-201ENST00000504166 1679 ntBASIC17.77■□□□□ 0.43
PHGDHO43175 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.77■□□□□ 0.43
PHGDHO43175 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PHGDHO43175 SIRPAP1-201ENST00000448467 1770 ntBASIC17.76■□□□□ 0.43
PHGDHO43175 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PHGDHO43175 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
PHGDHO43175 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.76■□□□□ 0.43
PHGDHO43175 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.76■□□□□ 0.43
PHGDHO43175 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.76■□□□□ 0.43
PHGDHO43175 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.76■□□□□ 0.43
PHGDHO43175 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.76■□□□□ 0.43
PHGDHO43175 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.76■□□□□ 0.43
PHGDHO43175 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.76■□□□□ 0.43
PHGDHO43175 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.76■□□□□ 0.43
PHGDHO43175 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.76■□□□□ 0.43
PHGDHO43175 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 AC079602.3-201ENST00000623931 403 ntBASIC17.76■□□□□ 0.43
PHGDHO43175 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
PHGDHO43175 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.76■□□□□ 0.43
PHGDHO43175 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.76■□□□□ 0.43
PHGDHO43175 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PHGDHO43175 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.76■□□□□ 0.43
PHGDHO43175 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PHGDHO43175 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PHGDHO43175 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms