Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
NOTCH3Q9UM47 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NOTCH3Q9UM47 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NOTCH3Q9UM47 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
NOTCH3Q9UM47 AC138969.2-201ENST00000532739 9932 ntBASIC13.82□□□□□ -0.2
NOTCH3Q9UM47 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
NOTCH3Q9UM47 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
NOTCH3Q9UM47 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC13.82□□□□□ -0.2
NOTCH3Q9UM47 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 PTGES2-AS1-201ENST00000443493 2100 ntBASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 PAN3-AS1-201ENST00000563843 1351 ntBASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 AC005104.2-201ENST00000427818 678 ntBASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 MIR5100-201ENST00000579544 119 ntBASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 PKD1P1-201ENST00000458669 6805 ntBASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC13.81□□□□□ -0.2
NOTCH3Q9UM47 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 ACE-204ENST00000428043 5120 ntTSL 2 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 HEIH-201ENST00000623091 1652 ntBASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 RBM17P3-201ENST00000417687 1192 ntBASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms