Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TDP1Q9NUW8 SIRPAP1-201ENST00000448467 1770 ntBASIC18.33■□□□□ 0.53
TDP1Q9NUW8 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 AL591424.1-201ENST00000442569 1213 ntBASIC18.33■□□□□ 0.52
TDP1Q9NUW8 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TDP1Q9NUW8 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 MED15P5-201ENST00000423150 992 ntBASIC18.32■□□□□ 0.52
TDP1Q9NUW8 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 AC140113.2-201ENST00000604370 208 ntBASIC18.32■□□□□ 0.52
TDP1Q9NUW8 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 AC135776.1-201ENST00000319817 2481 ntBASIC18.32■□□□□ 0.52
TDP1Q9NUW8 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.32■□□□□ 0.52
TDP1Q9NUW8 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 BX842568.4-201ENST00000421222 227 ntBASIC18.31■□□□□ 0.52
TDP1Q9NUW8 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 PGAM5P1-201ENST00000518923 814 ntBASIC18.31■□□□□ 0.52
TDP1Q9NUW8 UNC93B6-202ENST00000528242 690 ntBASIC18.31■□□□□ 0.52
TDP1Q9NUW8 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.31■□□□□ 0.52
TDP1Q9NUW8 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms