Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 DUTP2-201ENST00000519164 463 ntBASIC18.12■□□□□ 0.49
CHFRQ96EP1 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 AC040169.1-201ENST00000565382 521 ntBASIC18.12■□□□□ 0.49
CHFRQ96EP1 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CHFRQ96EP1 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHFRQ96EP1 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 AC098818.2-201ENST00000564925 2320 ntBASIC18.11■□□□□ 0.49
CHFRQ96EP1 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 KRT18P2-201ENST00000447938 1258 ntBASIC18.11■□□□□ 0.49
CHFRQ96EP1 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 AC148477.5-201ENST00000625164 1645 ntBASIC18.11■□□□□ 0.49
CHFRQ96EP1 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 AC073592.3-201ENST00000625118 1834 ntBASIC18.11■□□□□ 0.49
CHFRQ96EP1 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.11■□□□□ 0.49
CHFRQ96EP1 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHFRQ96EP1 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHFRQ96EP1 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHFRQ96EP1 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 SIRPAP1-201ENST00000448467 1770 ntBASIC18.1■□□□□ 0.49
CHFRQ96EP1 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHFRQ96EP1 AL049757.1-201ENST00000616842 1596 ntBASIC18.1■□□□□ 0.49
CHFRQ96EP1 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHFRQ96EP1 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 COX5BP2-201ENST00000392354 334 ntBASIC18.1■□□□□ 0.49
CHFRQ96EP1 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 AC004832.2-201ENST00000426397 482 ntBASIC18.1■□□□□ 0.49
CHFRQ96EP1 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 RNA5SP416-201ENST00000516838 111 ntBASIC18.1■□□□□ 0.49
CHFRQ96EP1 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 AP001160.2-201ENST00000596071 487 ntBASIC18.1■□□□□ 0.49
CHFRQ96EP1 AC073592.5-201ENST00000624854 528 ntBASIC18.1■□□□□ 0.49
CHFRQ96EP1 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHFRQ96EP1 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHFRQ96EP1 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.1■□□□□ 0.49
CHFRQ96EP1 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHFRQ96EP1 AC132938.5-201ENST00000624980 1813 ntBASIC18.09■□□□□ 0.49
CHFRQ96EP1 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms