Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13CQ709C8 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS13CQ709C8 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS13CQ709C8 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13CQ709C8 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13CQ709C8 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13CQ709C8 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
VPS13CQ709C8 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13CQ709C8 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13CQ709C8 AC096633.1-201ENST00000422446 749 ntBASIC14.8□□□□□ -0.04
VPS13CQ709C8 KRT18P65-201ENST00000439811 1286 ntBASIC14.8□□□□□ -0.04
VPS13CQ709C8 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13CQ709C8 ARTN-206ENST00000472435 402 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS13CQ709C8 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13CQ709C8 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13CQ709C8 AC006557.2-201ENST00000592985 1240 ntBASIC14.8□□□□□ -0.04
VPS13CQ709C8 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS13CQ709C8 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13CQ709C8 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
VPS13CQ709C8 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13CQ709C8 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 MYLKP1-201ENST00000509077 1580 ntBASIC14.79□□□□□ -0.04
VPS13CQ709C8 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 RHOQP3-201ENST00000437982 621 ntBASIC14.79□□□□□ -0.04
VPS13CQ709C8 GAPDHP21-201ENST00000450301 1010 ntBASIC14.79□□□□□ -0.04
VPS13CQ709C8 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 NCF1C-201ENST00000438382 1427 ntBASIC14.79□□□□□ -0.04
VPS13CQ709C8 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 MIR4745-201ENST00000577608 62 ntBASIC14.79□□□□□ -0.04
VPS13CQ709C8 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13CQ709C8 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
VPS13CQ709C8 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13CQ709C8 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13CQ709C8 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13CQ709C8 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13CQ709C8 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13CQ709C8 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13CQ709C8 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 AL513210.1-201ENST00000629608 234 ntBASIC14.78□□□□□ -0.04
VPS13CQ709C8 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13CQ709C8 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 IGHV3-65-201ENST00000523210 341 ntBASIC14.78□□□□□ -0.04
VPS13CQ709C8 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 AC087641.1-201ENST00000557561 1021 ntBASIC14.78□□□□□ -0.04
VPS13CQ709C8 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS13CQ709C8 AC105339.1-204ENST00000636249 355 ntBASIC14.78□□□□□ -0.04
VPS13CQ709C8 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13CQ709C8 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13CQ709C8 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13CQ709C8 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
VPS13CQ709C8 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC14.77□□□□□ -0.04
VPS13CQ709C8 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.77□□□□□ -0.04
VPS13CQ709C8 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13CQ709C8 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.77□□□□□ -0.04
VPS13CQ709C8 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
VPS13CQ709C8 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC14.77□□□□□ -0.04
VPS13CQ709C8 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.04
VPS13CQ709C8 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13CQ709C8 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13CQ709C8 ADH5P3-201ENST00000433842 1137 ntBASIC14.77□□□□□ -0.05
VPS13CQ709C8 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13CQ709C8 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
VPS13CQ709C8 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS13CQ709C8 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13CQ709C8 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms