Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 AL031598.1-201ENST00000561511 1773 ntBASIC22.36■■□□□ 1.17
RC3H1Q5TC82 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 AC093028.1-201ENST00000622998 982 ntBASIC22.36■■□□□ 1.17
RC3H1Q5TC82 AL513210.1-201ENST00000629608 234 ntBASIC22.36■■□□□ 1.17
RC3H1Q5TC82 AC007064.4-201ENST00000637740 555 ntBASIC22.36■■□□□ 1.17
RC3H1Q5TC82 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RC3H1Q5TC82 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 STK19B-204ENST00000512515 211 ntBASIC22.35■■□□□ 1.17
RC3H1Q5TC82 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RC3H1Q5TC82 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 AC126763.1-201ENST00000552015 2118 ntBASIC22.34■■□□□ 1.17
RC3H1Q5TC82 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 CFL1-212ENST00000531413 636 ntTSL 3 BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 AC023141.13-201ENST00000604991 943 ntBASIC22.34■■□□□ 1.17
RC3H1Q5TC82 AC092902.6-201ENST00000641783 218 ntBASIC22.34■■□□□ 1.17
RC3H1Q5TC82 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 AC097637.2-201ENST00000624096 1997 ntBASIC22.34■■□□□ 1.17
RC3H1Q5TC82 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
RC3H1Q5TC82 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 DDT-204ENST00000404092 805 ntTSL 3 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 AL035633.1-201ENST00000406139 838 ntBASIC22.33■■□□□ 1.17
RC3H1Q5TC82 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 AL096865.1-201ENST00000606796 927 ntBASIC22.33■■□□□ 1.17
RC3H1Q5TC82 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 AC091812.2-201ENST00000619081 385 ntBASIC22.33■■□□□ 1.17
RC3H1Q5TC82 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RC3H1Q5TC82 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC22.33■■□□□ 1.16
RC3H1Q5TC82 AC116562.4-201ENST00000641316 2276 ntBASIC22.33■■□□□ 1.16
RC3H1Q5TC82 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC22.33■■□□□ 1.16
RC3H1Q5TC82 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
RC3H1Q5TC82 AC009336.1-201ENST00000608941 1553 ntBASIC22.33■■□□□ 1.16
RC3H1Q5TC82 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
RC3H1Q5TC82 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC22.32■■□□□ 1.16
RC3H1Q5TC82 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
RC3H1Q5TC82 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RC3H1Q5TC82 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RC3H1Q5TC82 PC-208ENST00000529047 1607 ntTSL 3 BASIC22.32■■□□□ 1.16
RC3H1Q5TC82 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RC3H1Q5TC82 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RC3H1Q5TC82 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms