Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 FAM87A-204ENST00000613235 858 ntBASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 AC010947.1-201ENST00000623454 693 ntBASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LRIF1Q5T3J3 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 KRT18P65-201ENST00000439811 1286 ntBASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 AL157888.1-201ENST00000631930 593 ntBASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 KRT17P2-201ENST00000300992 1314 ntBASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 KRT89P-201ENST00000620027 1478 ntBASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
LRIF1Q5T3J3 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 HMGA1P5-201ENST00000412453 271 ntBASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 KRT8P47-201ENST00000604727 1398 ntBASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 KRT8P9-201ENST00000558927 1449 ntBASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
LRIF1Q5T3J3 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms