Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 KRT18P32-201ENST00000424695 1287 ntBASIC12.69□□□□□ -0.38
COL7A1Q02388 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 NAA50-208ENST00000497255 789 ntTSL 5 BASIC12.69□□□□□ -0.38
COL7A1Q02388 CR383656.12-201ENST00000549567 513 ntBASIC12.69□□□□□ -0.38
COL7A1Q02388 NAA60-208ENST00000570819 833 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 AC008667.4-201ENST00000607370 168 ntBASIC12.69□□□□□ -0.38
COL7A1Q02388 SRP9-204ENST00000619790 377 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
COL7A1Q02388 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 AC018445.3-201ENST00000624177 1945 ntBASIC12.69□□□□□ -0.38
COL7A1Q02388 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
COL7A1Q02388 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC12.69□□□□□ -0.38
COL7A1Q02388 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC12.69□□□□□ -0.38
COL7A1Q02388 AC122714.2-201ENST00000502787 707 ntBASIC12.69□□□□□ -0.38
COL7A1Q02388 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 CECR7-204ENST00000609932 568 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
COL7A1Q02388 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 AL161938.1-201ENST00000569833 2180 ntBASIC12.69□□□□□ -0.38
COL7A1Q02388 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC12.69□□□□□ -0.38
COL7A1Q02388 COBL-210ENST00000632460 1941 ntTSL 5 BASIC12.69□□□□□ -0.38
COL7A1Q02388 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
COL7A1Q02388 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC12.68□□□□□ -0.38
COL7A1Q02388 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC12.68□□□□□ -0.38
COL7A1Q02388 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC12.68□□□□□ -0.38
COL7A1Q02388 BID-204ENST00000399767 2129 ntTSL 2 BASIC12.68□□□□□ -0.38
COL7A1Q02388 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
COL7A1Q02388 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
COL7A1Q02388 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12.68□□□□□ -0.38
COL7A1Q02388 CYB561-216ENST00000582297 897 ntTSL 3 BASIC12.68□□□□□ -0.38
COL7A1Q02388 AL606495.2-201ENST00000605867 535 ntBASIC12.68□□□□□ -0.38
COL7A1Q02388 MED16-214ENST00000617672 554 ntTSL 5 BASIC12.68□□□□□ -0.38
COL7A1Q02388 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC12.68□□□□□ -0.38
COL7A1Q02388 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC12.68□□□□□ -0.38
COL7A1Q02388 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 TFAMP1-201ENST00000412727 736 ntBASIC12.68□□□□□ -0.38
COL7A1Q02388 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC12.68□□□□□ -0.38
COL7A1Q02388 AL512356.2-201ENST00000546955 174 ntBASIC12.68□□□□□ -0.38
COL7A1Q02388 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
COL7A1Q02388 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC12.68□□□□□ -0.38
COL7A1Q02388 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC12.68□□□□□ -0.38
COL7A1Q02388 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC12.68□□□□□ -0.38
COL7A1Q02388 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC12.68□□□□□ -0.38
COL7A1Q02388 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC12.68□□□□□ -0.38
COL7A1Q02388 NME2P1-201ENST00000426182 414 ntBASIC12.68□□□□□ -0.38
COL7A1Q02388 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC12.68□□□□□ -0.38
COL7A1Q02388 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
COL7A1Q02388 AC004835.2-201ENST00000603762 682 ntBASIC12.68□□□□□ -0.38
COL7A1Q02388 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
COL7A1Q02388 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC12.68□□□□□ -0.38
COL7A1Q02388 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL7A1Q02388 MYLKP1-201ENST00000509077 1580 ntBASIC12.68□□□□□ -0.38
COL7A1Q02388 AC092919.2-201ENST00000623631 1645 ntBASIC12.68□□□□□ -0.38
COL7A1Q02388 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
COL7A1Q02388 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC12.67□□□□□ -0.38
COL7A1Q02388 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC12.67□□□□□ -0.38
COL7A1Q02388 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC12.67□□□□□ -0.38
COL7A1Q02388 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
COL7A1Q02388 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC12.67□□□□□ -0.38
COL7A1Q02388 FAM86GP-201ENST00000448322 971 ntBASIC12.67□□□□□ -0.38
COL7A1Q02388 TERF1P3-201ENST00000505638 1227 ntBASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms