Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
PKNOX1P55347 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
PKNOX1P55347 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.56■□□□□ 0.4
PKNOX1P55347 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
PKNOX1P55347 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.56■□□□□ 0.4
PKNOX1P55347 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.56■□□□□ 0.4
PKNOX1P55347 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.56■□□□□ 0.4
PKNOX1P55347 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
PKNOX1P55347 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 MIR4497-201ENST00000583208 89 ntBASIC17.56■□□□□ 0.4
PKNOX1P55347 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.56■□□□□ 0.4
PKNOX1P55347 AC024243.1-201ENST00000609234 778 ntBASIC17.56■□□□□ 0.4
PKNOX1P55347 AC010947.1-201ENST00000623454 693 ntBASIC17.56■□□□□ 0.4
PKNOX1P55347 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PKNOX1P55347 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.56■□□□□ 0.4
PKNOX1P55347 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.56■□□□□ 0.4
PKNOX1P55347 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.55■□□□□ 0.4
PKNOX1P55347 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.55■□□□□ 0.4
PKNOX1P55347 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.55■□□□□ 0.4
PKNOX1P55347 AC092865.7-201ENST00000641832 219 ntBASIC17.55■□□□□ 0.4
PKNOX1P55347 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 CYP2D8P-201ENST00000433633 1490 ntBASIC17.55■□□□□ 0.4
PKNOX1P55347 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.55■□□□□ 0.4
PKNOX1P55347 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PKNOX1P55347 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.55■□□□□ 0.4
PKNOX1P55347 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
PKNOX1P55347 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
PKNOX1P55347 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.54■□□□□ 0.4
PKNOX1P55347 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PKNOX1P55347 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
PKNOX1P55347 HMGA1P5-201ENST00000412453 271 ntBASIC17.54■□□□□ 0.4
PKNOX1P55347 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PKNOX1P55347 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.54■□□□□ 0.4
PKNOX1P55347 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.54■□□□□ 0.4
PKNOX1P55347 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
PKNOX1P55347 MIR3917-201ENST00000580971 93 ntBASIC17.54■□□□□ 0.4
PKNOX1P55347 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PKNOX1P55347 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.54■□□□□ 0.4
PKNOX1P55347 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PKNOX1P55347 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PKNOX1P55347 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.54■□□□□ 0.4
PKNOX1P55347 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms