Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.43■□□□□ 0.54
NEK3P51956 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
NEK3P51956 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.43■□□□□ 0.54
NEK3P51956 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.43■□□□□ 0.54
NEK3P51956 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
NEK3P51956 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 CHCHD2P8-201ENST00000429873 447 ntBASIC18.43■□□□□ 0.54
NEK3P51956 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.43■□□□□ 0.54
NEK3P51956 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.43■□□□□ 0.54
NEK3P51956 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.43■□□□□ 0.54
NEK3P51956 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.43■□□□□ 0.54
NEK3P51956 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.43■□□□□ 0.54
NEK3P51956 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.43■□□□□ 0.54
NEK3P51956 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.43■□□□□ 0.54
NEK3P51956 AC092119.3-201ENST00000612618 583 ntBASIC18.43■□□□□ 0.54
NEK3P51956 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
NEK3P51956 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.43■□□□□ 0.54
NEK3P51956 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.43■□□□□ 0.54
NEK3P51956 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.43■□□□□ 0.54
NEK3P51956 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
NEK3P51956 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NEK3P51956 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 SIRPAP1-201ENST00000448467 1770 ntBASIC18.42■□□□□ 0.54
NEK3P51956 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.42■□□□□ 0.54
NEK3P51956 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.42■□□□□ 0.54
NEK3P51956 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
NEK3P51956 KRT89P-201ENST00000620027 1478 ntBASIC18.42■□□□□ 0.54
NEK3P51956 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
NEK3P51956 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
NEK3P51956 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.42■□□□□ 0.54
NEK3P51956 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 GPR32P1-201ENST00000601788 811 ntBASIC18.42■□□□□ 0.54
NEK3P51956 AL390719.2-201ENST00000606993 987 ntBASIC18.42■□□□□ 0.54
NEK3P51956 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
NEK3P51956 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.42■□□□□ 0.54
NEK3P51956 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
NEK3P51956 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.42■□□□□ 0.54
NEK3P51956 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.42■□□□□ 0.54
NEK3P51956 AL645608.8-201ENST00000606034 2086 ntBASIC18.42■□□□□ 0.54
NEK3P51956 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
NEK3P51956 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
NEK3P51956 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
NEK3P51956 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.41■□□□□ 0.54
NEK3P51956 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.41■□□□□ 0.54
NEK3P51956 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 IGHGP-201ENST00000390555 1178 ntBASIC18.41■□□□□ 0.54
NEK3P51956 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
NEK3P51956 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.41■□□□□ 0.54
NEK3P51956 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
NEK3P51956 AC092329.2-201ENST00000598402 547 ntBASIC18.41■□□□□ 0.54
NEK3P51956 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
NEK3P51956 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
NEK3P51956 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
NEK3P51956 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.41■□□□□ 0.54
NEK3P51956 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.41■□□□□ 0.54
NEK3P51956 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms