Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PTPN9P43378 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PTPN9P43378 DRAXINP1-201ENST00000437611 948 ntBASIC18.57■□□□□ 0.56
PTPN9P43378 AP002383.4-201ENST00000442518 975 ntBASIC18.57■□□□□ 0.56
PTPN9P43378 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.57■□□□□ 0.56
PTPN9P43378 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.57■□□□□ 0.56
PTPN9P43378 AC005336.2-201ENST00000593183 939 ntBASIC18.57■□□□□ 0.56
PTPN9P43378 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.57■□□□□ 0.56
PTPN9P43378 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.57■□□□□ 0.56
PTPN9P43378 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
PTPN9P43378 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
PTPN9P43378 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PTPN9P43378 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTPN9P43378 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PTPN9P43378 AC125634.1-201ENST00000438758 1403 ntBASIC18.57■□□□□ 0.56
PTPN9P43378 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.57■□□□□ 0.56
PTPN9P43378 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.56■□□□□ 0.56
PTPN9P43378 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.56■□□□□ 0.56
PTPN9P43378 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.56■□□□□ 0.56
PTPN9P43378 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.56■□□□□ 0.56
PTPN9P43378 BX276092.7-203ENST00000637198 1536 ntBASIC18.56■□□□□ 0.56
PTPN9P43378 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.56■□□□□ 0.56
PTPN9P43378 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
PTPN9P43378 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
PTPN9P43378 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PTPN9P43378 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.56■□□□□ 0.56
PTPN9P43378 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.56■□□□□ 0.56
PTPN9P43378 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PTPN9P43378 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PTPN9P43378 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.56■□□□□ 0.56
PTPN9P43378 AL138831.2-201ENST00000606564 490 ntBASIC18.56■□□□□ 0.56
PTPN9P43378 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PTPN9P43378 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.56■□□□□ 0.56
PTPN9P43378 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 LINC00896-202ENST00000609602 2128 ntBASIC18.56■□□□□ 0.56
PTPN9P43378 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.56■□□□□ 0.56
PTPN9P43378 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTPN9P43378 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.55■□□□□ 0.56
PTPN9P43378 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 KRT18P1-202ENST00000452408 1331 ntBASIC18.55■□□□□ 0.56
PTPN9P43378 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 REXO1L11P-201ENST00000620964 1927 ntBASIC18.55■□□□□ 0.56
PTPN9P43378 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PTPN9P43378 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.55■□□□□ 0.56
PTPN9P43378 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.55■□□□□ 0.56
PTPN9P43378 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 LINC00304-203ENST00000565008 1864 ntBASIC18.55■□□□□ 0.56
PTPN9P43378 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.55■□□□□ 0.56
PTPN9P43378 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.55■□□□□ 0.56
PTPN9P43378 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.55■□□□□ 0.56
PTPN9P43378 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 TPSP2-201ENST00000561760 610 ntBASIC18.55■□□□□ 0.56
PTPN9P43378 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.55■□□□□ 0.56
PTPN9P43378 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.55■□□□□ 0.56
PTPN9P43378 AC069148.1-201ENST00000608741 768 ntBASIC18.55■□□□□ 0.56
PTPN9P43378 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 LINC01451-201ENST00000623792 534 ntBASIC18.55■□□□□ 0.56
PTPN9P43378 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PTPN9P43378 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.55■□□□□ 0.56
PTPN9P43378 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
PTPN9P43378 AL355312.1-201ENST00000407115 2176 ntBASIC18.55■□□□□ 0.56
PTPN9P43378 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
PTPN9P43378 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PTPN9P43378 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.55■□□□□ 0.56
PTPN9P43378 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTPN9P43378 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.54■□□□□ 0.56
PTPN9P43378 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
PTPN9P43378 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms