Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.37■□□□□ 0.37
HNF4AP41235 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.37■□□□□ 0.37
HNF4AP41235 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.37■□□□□ 0.37
HNF4AP41235 KRT18P48-201ENST00000434763 852 ntBASIC17.37■□□□□ 0.37
HNF4AP41235 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.37■□□□□ 0.37
HNF4AP41235 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.37■□□□□ 0.37
HNF4AP41235 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.37■□□□□ 0.37
HNF4AP41235 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.37■□□□□ 0.37
HNF4AP41235 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.37■□□□□ 0.37
HNF4AP41235 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.37■□□□□ 0.37
HNF4AP41235 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.37■□□□□ 0.37
HNF4AP41235 AC087388.1-201ENST00000571370 1112 ntBASIC17.37■□□□□ 0.37
HNF4AP41235 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HNF4AP41235 AL590326.2-201ENST00000625139 305 ntBASIC17.37■□□□□ 0.37
HNF4AP41235 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.37■□□□□ 0.37
HNF4AP41235 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.37■□□□□ 0.37
HNF4AP41235 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.37■□□□□ 0.37
HNF4AP41235 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.37■□□□□ 0.37
HNF4AP41235 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.37■□□□□ 0.37
HNF4AP41235 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HNF4AP41235 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HNF4AP41235 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HNF4AP41235 AC006116.8-202ENST00000587620 1550 ntBASIC17.36■□□□□ 0.37
HNF4AP41235 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HNF4AP41235 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.36■□□□□ 0.37
HNF4AP41235 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HNF4AP41235 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HNF4AP41235 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.36■□□□□ 0.37
HNF4AP41235 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
HNF4AP41235 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.36■□□□□ 0.37
HNF4AP41235 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
HNF4AP41235 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.36■□□□□ 0.37
HNF4AP41235 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.36■□□□□ 0.37
HNF4AP41235 KRT18P65-201ENST00000439811 1286 ntBASIC17.36■□□□□ 0.37
HNF4AP41235 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.36■□□□□ 0.37
HNF4AP41235 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.36■□□□□ 0.37
HNF4AP41235 ZNF444P1-201ENST00000559497 298 ntBASIC17.36■□□□□ 0.37
HNF4AP41235 AC010331.1-201ENST00000611423 582 ntBASIC17.36■□□□□ 0.37
HNF4AP41235 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HNF4AP41235 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.36■□□□□ 0.37
HNF4AP41235 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.36■□□□□ 0.37
HNF4AP41235 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.36■□□□□ 0.37
HNF4AP41235 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HNF4AP41235 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HNF4AP41235 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
HNF4AP41235 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.35■□□□□ 0.37
HNF4AP41235 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.35■□□□□ 0.37
HNF4AP41235 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.35■□□□□ 0.37
HNF4AP41235 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.35■□□□□ 0.37
HNF4AP41235 AC083849.1-201ENST00000615227 514 ntBASIC17.35■□□□□ 0.37
HNF4AP41235 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.35■□□□□ 0.37
HNF4AP41235 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HNF4AP41235 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.35■□□□□ 0.37
HNF4AP41235 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HNF4AP41235 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms