Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC140878.1-201ENST00000565277 250 ntBASIC21.58■■□□□ 1.04
BRCA1P38398 COX11-202ENST00000571584 1108 ntTSL 2 BASIC21.58■■□□□ 1.04
BRCA1P38398 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
BRCA1P38398 LINC02560-201ENST00000596379 459 ntBASIC21.58■■□□□ 1.04
BRCA1P38398 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
BRCA1P38398 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
BRCA1P38398 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC21.57■■□□□ 1.04
BRCA1P38398 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.57■■□□□ 1.04
BRCA1P38398 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
BRCA1P38398 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.57■■□□□ 1.04
BRCA1P38398 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
BRCA1P38398 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
BRCA1P38398 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.57■■□□□ 1.04
BRCA1P38398 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
BRCA1P38398 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
BRCA1P38398 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.57■■□□□ 1.04
BRCA1P38398 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
BRCA1P38398 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC21.57■■□□□ 1.04
BRCA1P38398 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
BRCA1P38398 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRCA1P38398 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
BRCA1P38398 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC21.56■■□□□ 1.04
BRCA1P38398 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 THTPA-204ENST00000554970 569 ntTSL 4 BASIC21.56■■□□□ 1.04
BRCA1P38398 THTPA-206ENST00000556015 535 ntTSL 3 BASIC21.56■■□□□ 1.04
BRCA1P38398 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.56■■□□□ 1.04
BRCA1P38398 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 AC140658.5-201ENST00000438532 169 ntBASIC21.56■■□□□ 1.04
BRCA1P38398 AC087163.2-201ENST00000457299 853 ntBASIC21.56■■□□□ 1.04
BRCA1P38398 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
BRCA1P38398 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.56■■□□□ 1.04
BRCA1P38398 AC109462.3-201ENST00000573934 613 ntBASIC21.56■■□□□ 1.04
BRCA1P38398 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.56■■□□□ 1.04
BRCA1P38398 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 ACTL9-202ENST00000612068 1252 ntBASIC21.56■■□□□ 1.04
BRCA1P38398 AL390754.1-201ENST00000619088 582 ntBASIC21.56■■□□□ 1.04
BRCA1P38398 SERF2-217ENST00000630046 862 ntTSL 5 BASIC21.56■■□□□ 1.04
BRCA1P38398 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.56■■□□□ 1.04
BRCA1P38398 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRCA1P38398 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
BRCA1P38398 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.55■■□□□ 1.04
BRCA1P38398 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC21.55■■□□□ 1.04
BRCA1P38398 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC21.55■■□□□ 1.04
BRCA1P38398 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
BRCA1P38398 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.55■■□□□ 1.04
BRCA1P38398 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
BRCA1P38398 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
BRCA1P38398 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRCA1P38398 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.55■■□□□ 1.04
BRCA1P38398 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
BRCA1P38398 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC21.55■■□□□ 1.04
BRCA1P38398 AC026120.1-201ENST00000611536 926 ntBASIC21.55■■□□□ 1.04
BRCA1P38398 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
BRCA1P38398 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
BRCA1P38398 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
BRCA1P38398 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
BRCA1P38398 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 COX5BP2-201ENST00000392354 334 ntBASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms