Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.98■□□□□ 0.47
PTPN4P29074 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.98■□□□□ 0.47
PTPN4P29074 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.98■□□□□ 0.47
PTPN4P29074 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.98■□□□□ 0.47
PTPN4P29074 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.98■□□□□ 0.47
PTPN4P29074 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.98■□□□□ 0.47
PTPN4P29074 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.98■□□□□ 0.47
PTPN4P29074 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.98■□□□□ 0.47
PTPN4P29074 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN4P29074 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.98■□□□□ 0.47
PTPN4P29074 KRT8P11-201ENST00000409686 1436 ntBASIC17.98■□□□□ 0.47
PTPN4P29074 KRT8P45-201ENST00000414328 1447 ntBASIC17.98■□□□□ 0.47
PTPN4P29074 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
PTPN4P29074 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
PTPN4P29074 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.97■□□□□ 0.47
PTPN4P29074 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
PTPN4P29074 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN4P29074 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN4P29074 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN4P29074 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN4P29074 HOMER2P1-201ENST00000455653 964 ntBASIC17.97■□□□□ 0.47
PTPN4P29074 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.97■□□□□ 0.47
PTPN4P29074 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN4P29074 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.97■□□□□ 0.47
PTPN4P29074 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.97■□□□□ 0.47
PTPN4P29074 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN4P29074 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.97■□□□□ 0.47
PTPN4P29074 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PTPN4P29074 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PTPN4P29074 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 AL121761.2-201ENST00000598007 1648 ntBASIC17.97■□□□□ 0.47
PTPN4P29074 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN4P29074 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PTPN4P29074 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN4P29074 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.97■□□□□ 0.47
PTPN4P29074 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
PTPN4P29074 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.96■□□□□ 0.47
PTPN4P29074 AC006116.8-202ENST00000587620 1550 ntBASIC17.96■□□□□ 0.47
PTPN4P29074 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
PTPN4P29074 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 LINC00602-201ENST00000629776 2065 ntBASIC17.96■□□□□ 0.47
PTPN4P29074 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.96■□□□□ 0.47
PTPN4P29074 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
PTPN4P29074 UPK3BP1-201ENST00000428678 509 ntBASIC17.96■□□□□ 0.47
PTPN4P29074 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 TSPY23P-201ENST00000440136 739 ntBASIC17.96■□□□□ 0.47
PTPN4P29074 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.96■□□□□ 0.47
PTPN4P29074 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.96■□□□□ 0.47
PTPN4P29074 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.96■□□□□ 0.47
PTPN4P29074 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.96■□□□□ 0.47
PTPN4P29074 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.96■□□□□ 0.47
PTPN4P29074 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 AC046158.3-201ENST00000624947 2558 ntBASIC17.96■□□□□ 0.47
PTPN4P29074 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.96■□□□□ 0.47
PTPN4P29074 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN4P29074 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms