Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 AC116562.4-201ENST00000641316 2276 ntBASIC18.3■□□□□ 0.52
COL9A1P20849 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.3■□□□□ 0.52
COL9A1P20849 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.3■□□□□ 0.52
COL9A1P20849 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
COL9A1P20849 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.3■□□□□ 0.52
COL9A1P20849 FAM58CP-201ENST00000435741 640 ntBASIC18.3■□□□□ 0.52
COL9A1P20849 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL9A1P20849 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
COL9A1P20849 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.3■□□□□ 0.52
COL9A1P20849 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
COL9A1P20849 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.3■□□□□ 0.52
COL9A1P20849 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.3■□□□□ 0.52
COL9A1P20849 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.3■□□□□ 0.52
COL9A1P20849 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 LINC01126-201ENST00000623515 1646 ntBASIC18.3■□□□□ 0.52
COL9A1P20849 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL9A1P20849 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL9A1P20849 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.3■□□□□ 0.52
COL9A1P20849 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.3■□□□□ 0.52
COL9A1P20849 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL9A1P20849 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL9A1P20849 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.29■□□□□ 0.52
COL9A1P20849 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL9A1P20849 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
COL9A1P20849 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL9A1P20849 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL9A1P20849 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL9A1P20849 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL9A1P20849 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL9A1P20849 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL9A1P20849 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.29■□□□□ 0.52
COL9A1P20849 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.29■□□□□ 0.52
COL9A1P20849 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.29■□□□□ 0.52
COL9A1P20849 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.29■□□□□ 0.52
COL9A1P20849 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.29■□□□□ 0.52
COL9A1P20849 AC092658.1-201ENST00000505836 891 ntBASIC18.29■□□□□ 0.52
COL9A1P20849 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.29■□□□□ 0.52
COL9A1P20849 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.29■□□□□ 0.52
COL9A1P20849 HILS1-202ENST00000545329 423 ntBASIC18.29■□□□□ 0.52
COL9A1P20849 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.29■□□□□ 0.52
COL9A1P20849 AC008687.5-201ENST00000593746 558 ntBASIC18.29■□□□□ 0.52
COL9A1P20849 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL9A1P20849 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.29■□□□□ 0.52
COL9A1P20849 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL9A1P20849 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.29■□□□□ 0.52
COL9A1P20849 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL9A1P20849 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL9A1P20849 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.29■□□□□ 0.52
COL9A1P20849 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
COL9A1P20849 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.28■□□□□ 0.52
COL9A1P20849 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.28■□□□□ 0.52
COL9A1P20849 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 HAUS4P1-201ENST00000406739 1145 ntBASIC18.28■□□□□ 0.52
COL9A1P20849 MTATP6P19-201ENST00000413797 659 ntBASIC18.28■□□□□ 0.52
COL9A1P20849 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.28■□□□□ 0.52
COL9A1P20849 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.28■□□□□ 0.52
COL9A1P20849 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.28■□□□□ 0.52
COL9A1P20849 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
COL9A1P20849 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.28■□□□□ 0.52
COL9A1P20849 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL9A1P20849 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.28■□□□□ 0.52
COL9A1P20849 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.28■□□□□ 0.52
COL9A1P20849 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL9A1P20849 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL9A1P20849 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL9A1P20849 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL9A1P20849 LINC00602-201ENST00000629776 2065 ntBASIC18.27■□□□□ 0.52
COL9A1P20849 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL9A1P20849 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL9A1P20849 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL9A1P20849 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL9A1P20849 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.27■□□□□ 0.52
COL9A1P20849 AC005082.1-201ENST00000413042 2259 ntBASIC18.27■□□□□ 0.52
COL9A1P20849 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms