Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.48■□□□□ 0.55
HMGA1P17096 KRT18P58-201ENST00000527480 1120 ntBASIC18.48■□□□□ 0.55
HMGA1P17096 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HMGA1P17096 AC105339.3-201ENST00000560043 636 ntBASIC18.48■□□□□ 0.55
HMGA1P17096 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGA1P17096 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGA1P17096 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGA1P17096 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGA1P17096 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
HMGA1P17096 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGA1P17096 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGA1P17096 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGA1P17096 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGA1P17096 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 AP002414.3-201ENST00000589352 1468 ntBASIC18.47■□□□□ 0.55
HMGA1P17096 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
HMGA1P17096 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGA1P17096 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGA1P17096 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.47■□□□□ 0.55
HMGA1P17096 DDX43P3-201ENST00000441064 443 ntBASIC18.47■□□□□ 0.55
HMGA1P17096 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.47■□□□□ 0.55
HMGA1P17096 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.47■□□□□ 0.55
HMGA1P17096 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.47■□□□□ 0.55
HMGA1P17096 AC116407.2-201ENST00000613639 860 ntBASIC18.47■□□□□ 0.55
HMGA1P17096 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGA1P17096 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.47■□□□□ 0.55
HMGA1P17096 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGA1P17096 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGA1P17096 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGA1P17096 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGA1P17096 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
HMGA1P17096 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
HMGA1P17096 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGA1P17096 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGA1P17096 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGA1P17096 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGA1P17096 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.46■□□□□ 0.55
HMGA1P17096 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
HMGA1P17096 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGA1P17096 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 AC104109.2-201ENST00000602919 1418 ntBASIC18.46■□□□□ 0.55
HMGA1P17096 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGA1P17096 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
HMGA1P17096 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGA1P17096 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
HMGA1P17096 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGA1P17096 AC148477.5-201ENST00000625164 1645 ntBASIC18.45■□□□□ 0.54
HMGA1P17096 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
HMGA1P17096 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGA1P17096 ZNF259P1-201ENST00000407656 1365 ntBASIC18.45■□□□□ 0.54
HMGA1P17096 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGA1P17096 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGA1P17096 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGA1P17096 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGA1P17096 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGA1P17096 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HMGA1P17096 KRT18P27-201ENST00000427733 1299 ntBASIC18.45■□□□□ 0.54
HMGA1P17096 POLD2P1-201ENST00000511220 997 ntBASIC18.45■□□□□ 0.54
HMGA1P17096 RNA5SP415-201ENST00000517246 115 ntBASIC18.45■□□□□ 0.54
HMGA1P17096 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGA1P17096 AC034105.1-201ENST00000563488 319 ntBASIC18.45■□□□□ 0.54
HMGA1P17096 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.45■□□□□ 0.54
HMGA1P17096 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGA1P17096 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGA1P17096 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HMGA1P17096 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGA1P17096 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
HMGA1P17096 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HMGA1P17096 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGA1P17096 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGA1P17096 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms