Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PCNAP12004 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.45■□□□□ 0.38
PCNAP12004 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.45■□□□□ 0.38
PCNAP12004 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.45■□□□□ 0.38
PCNAP12004 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
PCNAP12004 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PCNAP12004 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.44■□□□□ 0.38
PCNAP12004 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.44■□□□□ 0.38
PCNAP12004 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.44■□□□□ 0.38
PCNAP12004 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.44■□□□□ 0.38
PCNAP12004 AC008687.5-201ENST00000593746 558 ntBASIC17.44■□□□□ 0.38
PCNAP12004 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.44■□□□□ 0.38
PCNAP12004 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.44■□□□□ 0.38
PCNAP12004 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PCNAP12004 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PCNAP12004 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 AC073508.3-201ENST00000619697 1419 ntBASIC17.44■□□□□ 0.38
PCNAP12004 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PCNAP12004 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCNAP12004 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.43■□□□□ 0.38
PCNAP12004 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PCNAP12004 SPDYE15P-201ENST00000424157 909 ntBASIC17.43■□□□□ 0.38
PCNAP12004 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.43■□□□□ 0.38
PCNAP12004 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.43■□□□□ 0.38
PCNAP12004 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PCNAP12004 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCNAP12004 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.42■□□□□ 0.38
PCNAP12004 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.42■□□□□ 0.38
PCNAP12004 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.42■□□□□ 0.38
PCNAP12004 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PCNAP12004 AL136038.4-201ENST00000603606 1261 ntBASIC17.42■□□□□ 0.38
PCNAP12004 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.42■□□□□ 0.38
PCNAP12004 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.42■□□□□ 0.38
PCNAP12004 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
PCNAP12004 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCNAP12004 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms