Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 AL671883.3-201ENST00000603274 991 ntBASIC21.02■□□□□ 0.96
HLA-DOAP06340 AC116407.2-201ENST00000613639 860 ntBASIC21.02■□□□□ 0.96
HLA-DOAP06340 AC023511.2-201ENST00000618803 211 ntBASIC21.02■□□□□ 0.96
HLA-DOAP06340 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
HLA-DOAP06340 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 ADM-208ENST00000534464 1640 ntTSL 2 BASIC21.02■□□□□ 0.96
HLA-DOAP06340 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DOAP06340 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
HLA-DOAP06340 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
HLA-DOAP06340 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HLA-DOAP06340 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HLA-DOAP06340 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DOAP06340 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DOAP06340 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DOAP06340 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DOAP06340 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DOAP06340 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC21.01■□□□□ 0.95
HLA-DOAP06340 RPL13AP23-201ENST00000480739 586 ntBASIC21.01■□□□□ 0.95
HLA-DOAP06340 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC21.01■□□□□ 0.95
HLA-DOAP06340 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DOAP06340 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC21.01■□□□□ 0.95
HLA-DOAP06340 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HLA-DOAP06340 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DOAP06340 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.01■□□□□ 0.95
HLA-DOAP06340 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC21.01■□□□□ 0.95
HLA-DOAP06340 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DOAP06340 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
HLA-DOAP06340 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 ZNF259P1-201ENST00000407656 1365 ntBASIC21■□□□□ 0.95
HLA-DOAP06340 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21■□□□□ 0.95
HLA-DOAP06340 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
HLA-DOAP06340 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC21■□□□□ 0.95
HLA-DOAP06340 INIP-202ENST00000374236 874 ntTSL 2 BASIC21■□□□□ 0.95
HLA-DOAP06340 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC21■□□□□ 0.95
HLA-DOAP06340 BX005266.1-201ENST00000473402 457 ntBASIC21■□□□□ 0.95
HLA-DOAP06340 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC21■□□□□ 0.95
HLA-DOAP06340 KRT18P58-201ENST00000527480 1120 ntBASIC21■□□□□ 0.95
HLA-DOAP06340 RNF151-202ENST00000569210 853 ntTSL 2 BASIC21■□□□□ 0.95
HLA-DOAP06340 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
HLA-DOAP06340 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC21■□□□□ 0.95
HLA-DOAP06340 AL022326.1-202ENST00000641533 845 ntBASIC21■□□□□ 0.95
HLA-DOAP06340 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
HLA-DOAP06340 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21■□□□□ 0.95
HLA-DOAP06340 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21■□□□□ 0.95
HLA-DOAP06340 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21■□□□□ 0.95
HLA-DOAP06340 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21■□□□□ 0.95
HLA-DOAP06340 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21■□□□□ 0.95
HLA-DOAP06340 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21■□□□□ 0.95
HLA-DOAP06340 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21■□□□□ 0.95
HLA-DOAP06340 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21■□□□□ 0.95
HLA-DOAP06340 AC020763.4-201ENST00000623414 4170 ntBASIC21■□□□□ 0.95
HLA-DOAP06340 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 AL138781.2-201ENST00000617896 1843 ntBASIC20.99■□□□□ 0.95
HLA-DOAP06340 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.99■□□□□ 0.95
HLA-DOAP06340 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.99■□□□□ 0.95
HLA-DOAP06340 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.99■□□□□ 0.95
HLA-DOAP06340 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.99■□□□□ 0.95
HLA-DOAP06340 AC008735.5-201ENST00000623544 497 ntBASIC20.99■□□□□ 0.95
HLA-DOAP06340 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.99■□□□□ 0.95
HLA-DOAP06340 AC107918.4-202ENST00000641623 219 ntBASIC20.99■□□□□ 0.95
HLA-DOAP06340 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
HLA-DOAP06340 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HLA-DOAP06340 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC20.99■□□□□ 0.95
HLA-DOAP06340 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DOAP06340 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.99■□□□□ 0.95
HLA-DOAP06340 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.98■□□□□ 0.95
HLA-DOAP06340 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms