Protein–RNA interactions for Protein: O95983

MBD3, Methyl-CpG-binding domain protein 3, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3O95983 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3O95983 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.51■□□□□ 0.87
MBD3O95983 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
MBD3O95983 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.51■□□□□ 0.87
MBD3O95983 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3O95983 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3O95983 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC20.51■□□□□ 0.87
MBD3O95983 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3O95983 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3O95983 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3O95983 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3O95983 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.51■□□□□ 0.87
MBD3O95983 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.51■□□□□ 0.87
MBD3O95983 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.51■□□□□ 0.87
MBD3O95983 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.51■□□□□ 0.87
MBD3O95983 AC116407.2-201ENST00000613639 860 ntBASIC20.51■□□□□ 0.87
MBD3O95983 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3O95983 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3O95983 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
MBD3O95983 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
MBD3O95983 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MBD3O95983 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
MBD3O95983 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.5■□□□□ 0.87
MBD3O95983 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.5■□□□□ 0.87
MBD3O95983 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.5■□□□□ 0.87
MBD3O95983 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.5■□□□□ 0.87
MBD3O95983 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.5■□□□□ 0.87
MBD3O95983 AC104771.1-201ENST00000603335 964 ntBASIC20.5■□□□□ 0.87
MBD3O95983 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.5■□□□□ 0.87
MBD3O95983 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 REXO1L11P-201ENST00000620964 1927 ntBASIC20.5■□□□□ 0.87
MBD3O95983 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
MBD3O95983 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.5■□□□□ 0.87
MBD3O95983 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
MBD3O95983 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MBD3O95983 PCDHA14-201ENST00000506751 2298 ntBASIC20.5■□□□□ 0.87
MBD3O95983 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.49■□□□□ 0.87
MBD3O95983 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
MBD3O95983 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
MBD3O95983 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
MBD3O95983 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
MBD3O95983 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.49■□□□□ 0.87
MBD3O95983 RNA5SP413-201ENST00000516373 109 ntBASIC20.49■□□□□ 0.87
MBD3O95983 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.49■□□□□ 0.87
MBD3O95983 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.49■□□□□ 0.87
MBD3O95983 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.49■□□□□ 0.87
MBD3O95983 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
MBD3O95983 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.49■□□□□ 0.87
MBD3O95983 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.49■□□□□ 0.87
MBD3O95983 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.49■□□□□ 0.87
MBD3O95983 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MBD3O95983 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MBD3O95983 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
MBD3O95983 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
MBD3O95983 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD3O95983 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.48■□□□□ 0.87
MBD3O95983 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MBD3O95983 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD3O95983 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD3O95983 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD3O95983 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
MBD3O95983 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
MBD3O95983 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
MBD3O95983 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
MBD3O95983 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.48■□□□□ 0.87
MBD3O95983 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.48■□□□□ 0.87
MBD3O95983 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.48■□□□□ 0.87
MBD3O95983 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
MBD3O95983 RARRES2P10-201ENST00000564312 460 ntBASIC20.48■□□□□ 0.87
MBD3O95983 SLC25A1P4-201ENST00000567977 778 ntBASIC20.48■□□□□ 0.87
MBD3O95983 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MBD3O95983 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.48■□□□□ 0.87
MBD3O95983 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MBD3O95983 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.48■□□□□ 0.87
MBD3O95983 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
MBD3O95983 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms