Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 AC092384.3-202ENST00000564646 2873 ntBASIC17.9■□□□□ 0.46
SHOX2O60902 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SHOX2O60902 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.9■□□□□ 0.46
SHOX2O60902 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 AL163051.1-201ENST00000569214 1512 ntBASIC17.9■□□□□ 0.46
SHOX2O60902 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.9■□□□□ 0.46
SHOX2O60902 DUSP5P2-201ENST00000426873 1033 ntBASIC17.9■□□□□ 0.46
SHOX2O60902 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.9■□□□□ 0.46
SHOX2O60902 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.9■□□□□ 0.46
SHOX2O60902 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.9■□□□□ 0.46
SHOX2O60902 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHOX2O60902 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.9■□□□□ 0.46
SHOX2O60902 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
SHOX2O60902 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SHOX2O60902 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 AC046185.3-201ENST00000623228 1824 ntBASIC17.89■□□□□ 0.45
SHOX2O60902 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SHOX2O60902 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SHOX2O60902 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SHOX2O60902 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.89■□□□□ 0.45
SHOX2O60902 CROCCP5-201ENST00000436658 830 ntBASIC17.89■□□□□ 0.45
SHOX2O60902 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.89■□□□□ 0.45
SHOX2O60902 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
SHOX2O60902 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.89■□□□□ 0.45
SHOX2O60902 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.89■□□□□ 0.45
SHOX2O60902 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.89■□□□□ 0.45
SHOX2O60902 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.89■□□□□ 0.45
SHOX2O60902 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
SHOX2O60902 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.89■□□□□ 0.45
SHOX2O60902 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SHOX2O60902 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.89■□□□□ 0.45
SHOX2O60902 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHOX2O60902 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.88■□□□□ 0.45
SHOX2O60902 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
SHOX2O60902 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
SHOX2O60902 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 PAUPAR-201ENST00000630360 2965 ntBASIC17.88■□□□□ 0.45
SHOX2O60902 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
SHOX2O60902 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
SHOX2O60902 AC034236.2-201ENST00000606662 1610 ntBASIC17.88■□□□□ 0.45
SHOX2O60902 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SHOX2O60902 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 MIPEPP3-201ENST00000412105 444 ntBASIC17.88■□□□□ 0.45
SHOX2O60902 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 AC026185.1-201ENST00000445748 174 ntBASIC17.88■□□□□ 0.45
SHOX2O60902 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SHOX2O60902 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.88■□□□□ 0.45
SHOX2O60902 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.88■□□□□ 0.45
SHOX2O60902 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.88■□□□□ 0.45
SHOX2O60902 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 AL662844.4-201ENST00000606367 2838 ntBASIC17.88■□□□□ 0.45
SHOX2O60902 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.88■□□□□ 0.45
SHOX2O60902 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHOX2O60902 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.87■□□□□ 0.45
SHOX2O60902 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SHOX2O60902 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
SHOX2O60902 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.87■□□□□ 0.45
SHOX2O60902 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.87■□□□□ 0.45
SHOX2O60902 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms