Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 Z69720.1-201ENST00000601483 472 ntBASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 AC067852.2-201ENST00000590513 2313 ntBASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A3BPQ9Y5P4 AC026471.1-201ENST00000564629 3026 ntBASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 TSPY12P-201ENST00000421279 868 ntBASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 SLC25A6P5-201ENST00000435663 894 ntBASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 AC104819.1-201ENST00000504587 486 ntBASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 AC074051.2-201ENST00000565115 352 ntBASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 AP000997.3-201ENST00000623333 2250 ntBASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A3BPQ9Y5P4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A3BPQ9Y5P4 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A3BPQ9Y5P4 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A3BPQ9Y5P4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A3BPQ9Y5P4 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A3BPQ9Y5P4 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 AL845331.1-201ENST00000424978 1190 ntBASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 VENTXP7-201ENST00000475503 772 ntBASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL4A3BPQ9Y5P4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 KRT18P65-201ENST00000439811 1286 ntBASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 KRT17P6-201ENST00000453795 1220 ntBASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20■□□□□ 0.79
COL4A3BPQ9Y5P4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms