Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 AD001527.2-201ENST00000622994 785 ntBASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.16■□□□□ 0.34
PCDHGA1Q9Y5H4 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 AC254562.1-201ENST00000417586 456 ntBASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 SNHG9-202ENST00000564014 471 ntBASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 AL589182.2-201ENST00000619332 1049 ntBASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PCDHGA1Q9Y5H4 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 METTL21AP1-201ENST00000438852 635 ntBASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 MIR3197-201ENST00000582241 73 ntBASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHGA1Q9Y5H4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 AC099343.3-201ENST00000605834 2503 ntBASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 AC116562.4-201ENST00000641316 2276 ntBASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 HCG11-201ENST00000411553 5696 ntBASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 SPDYE21P-201ENST00000413323 827 ntBASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 AC103564.2-201ENST00000432853 1299 ntBASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHGA1Q9Y5H4 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms