Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 AC004870.1-201ENST00000315132 882 ntBASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 AC016734.2-201ENST00000624325 1377 ntBASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 AC017007.3-201ENST00000479865 435 ntBASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 KRT18P41-201ENST00000518924 1277 ntBASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHB3Q9Y5E6 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 AP000593.1-201ENST00000393668 712 ntBASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHB3Q9Y5E6 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 TSPY22P-201ENST00000427496 604 ntBASIC17.53■□□□□ 0.4
PCDHB3Q9Y5E6 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms