Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.57■□□□□ 0.72
LIMA1Q9UHB6 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 AC024563.2-201ENST00000603282 481 ntBASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIMA1Q9UHB6 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 GCSHP2-201ENST00000560971 527 ntBASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 AC106820.2-201ENST00000563775 3264 ntBASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMA1Q9UHB6 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMA1Q9UHB6 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
LIMA1Q9UHB6 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
LIMA1Q9UHB6 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms