Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.04■□□□□ 0.96
DDX4Q9NQI0 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
DDX4Q9NQI0 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 AC009949.1-201ENST00000623048 1830 ntBASIC21.02■□□□□ 0.96
DDX4Q9NQI0 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 TMED1-207ENST00000591695 809 ntTSL 5 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 AL139424.1-201ENST00000607572 797 ntBASIC21.02■□□□□ 0.96
DDX4Q9NQI0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX4Q9NQI0 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.02■□□□□ 0.95
DDX4Q9NQI0 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.02■□□□□ 0.95
DDX4Q9NQI0 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.02■□□□□ 0.95
DDX4Q9NQI0 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 REXO1L9P-201ENST00000604264 2108 ntBASIC21.01■□□□□ 0.95
DDX4Q9NQI0 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
DDX4Q9NQI0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
DDX4Q9NQI0 AL138781.2-201ENST00000617896 1843 ntBASIC21■□□□□ 0.95
DDX4Q9NQI0 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms