Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 CD177P1-201ENST00000606252 935 ntBASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 GPAT2P1-201ENST00000444924 1672 ntBASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CHMP1AQ9HD42 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.46■□□□□ 0.06
CHMP1AQ9HD42 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CHMP1AQ9HD42 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CHMP1AQ9HD42 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.06
CHMP1AQ9HD42 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CHMP1AQ9HD42 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CHMP1AQ9HD42 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CHMP1AQ9HD42 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 AC108860.2-201ENST00000562760 2183 ntBASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 FLJ13224-201ENST00000313737 1514 ntBASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 SAPCD2P4-201ENST00000424595 1171 ntBASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC15.45■□□□□ 0.06
CHMP1AQ9HD42 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 AC099343.3-201ENST00000605834 2503 ntBASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 KRT18P29-201ENST00000397031 1267 ntBASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 DGCR10-201ENST00000609839 495 ntBASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 AL359736.2-201ENST00000621992 437 ntBASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 AL096828.2-201ENST00000567259 1965 ntBASIC15.44■□□□□ 0.06
CHMP1AQ9HD42 SRI-203ENST00000419179 1307 ntTSL 2 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
CHMP1AQ9HD42 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms