Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 AL133373.2-201ENST00000623187 2828 ntBASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 AC104819.1-201ENST00000504587 486 ntBASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 NOC2LP1-202ENST00000452600 2235 ntBASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTCHD1Q96NR3 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 AC246785.2-201ENST00000432512 513 ntBASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 AC074051.2-201ENST00000565115 352 ntBASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 AC022898.2-201ENST00000616822 1312 ntBASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms