Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 KRT18P21-201ENST00000515767 1272 ntBASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 AP005242.2-201ENST00000580065 1175 ntBASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
DEPDC4Q8N2C3 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
DEPDC4Q8N2C3 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.26
DEPDC4Q8N2C3 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
DEPDC4Q8N2C3 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
DEPDC4Q8N2C3 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
DEPDC4Q8N2C3 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 AP000692.2-201ENST00000608391 879 ntBASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 AC010331.1-201ENST00000611423 582 ntBASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
DEPDC4Q8N2C3 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 AC120057.1-201ENST00000483947 663 ntBASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 AC012306.2-201ENST00000609350 630 ntBASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 AL109659.2-201ENST00000606809 1674 ntBASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
DEPDC4Q8N2C3 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
DEPDC4Q8N2C3 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
DEPDC4Q8N2C3 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
DEPDC4Q8N2C3 AC084018.2-201ENST00000613093 2607 ntBASIC16.68■□□□□ 0.26
DEPDC4Q8N2C3 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
DEPDC4Q8N2C3 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
DEPDC4Q8N2C3 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
DEPDC4Q8N2C3 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
DEPDC4Q8N2C3 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
DEPDC4Q8N2C3 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms