Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC24.15■■□□□ 1.46
NPHP3Q7Z494 AP002414.1-201ENST00000391405 1147 ntBASIC24.14■■□□□ 1.46
NPHP3Q7Z494 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
NPHP3Q7Z494 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC24.14■■□□□ 1.46
NPHP3Q7Z494 DAD1-205ENST00000543337 501 ntTSL 3 BASIC24.14■■□□□ 1.46
NPHP3Q7Z494 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC24.14■■□□□ 1.46
NPHP3Q7Z494 AC023141.13-201ENST00000604991 943 ntBASIC24.14■■□□□ 1.46
NPHP3Q7Z494 AC007064.4-201ENST00000637740 555 ntBASIC24.14■■□□□ 1.46
NPHP3Q7Z494 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
NPHP3Q7Z494 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
NPHP3Q7Z494 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.46
NPHP3Q7Z494 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
NPHP3Q7Z494 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC24.14■■□□□ 1.45
NPHP3Q7Z494 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC24.14■■□□□ 1.45
NPHP3Q7Z494 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
NPHP3Q7Z494 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
NPHP3Q7Z494 FUT8-AS1-201ENST00000621019 1521 ntBASIC24.14■■□□□ 1.45
NPHP3Q7Z494 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 AC023141.5-201ENST00000458585 616 ntBASIC24.13■■□□□ 1.45
NPHP3Q7Z494 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 TAF8-206ENST00000472818 719 ntTSL 2 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 AC109322.1-201ENST00000524499 1264 ntBASIC24.13■■□□□ 1.45
NPHP3Q7Z494 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 GGTLC5P-201ENST00000617623 998 ntBASIC24.13■■□□□ 1.45
NPHP3Q7Z494 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
NPHP3Q7Z494 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 AC022145.2-201ENST00000598203 171 ntBASIC24.12■■□□□ 1.45
NPHP3Q7Z494 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC24.12■■□□□ 1.45
NPHP3Q7Z494 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 AC190387.1-201ENST00000551683 408 ntBASIC24.11■■□□□ 1.45
NPHP3Q7Z494 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC24.11■■□□□ 1.45
NPHP3Q7Z494 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 PTCHD3P3-201ENST00000403073 906 ntBASIC24.1■■□□□ 1.45
NPHP3Q7Z494 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 REXO1L3P-201ENST00000622202 1288 ntBASIC24.1■■□□□ 1.45
NPHP3Q7Z494 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
NPHP3Q7Z494 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC24.1■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms