Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 AC022898.2-201ENST00000616822 1312 ntBASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 AC100803.2-201ENST00000562459 1963 ntBASIC19.74■□□□□ 0.75
CCDC40Q4G0X9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 AC024563.2-201ENST00000603282 481 ntBASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 AL136038.4-201ENST00000603606 1261 ntBASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 AC012306.2-201ENST00000609350 630 ntBASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 AC097493.4-201ENST00000641197 219 ntBASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC40Q4G0X9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 AC139887.4-201ENST00000607877 719 ntBASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 AC011558.1-201ENST00000623459 338 ntBASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 AC079602.3-201ENST00000623931 403 ntBASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 AL391807.1-203ENST00000604392 2365 ntBASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC40Q4G0X9 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 SPDYE15P-201ENST00000424157 909 ntBASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 BX664615.1-201ENST00000443558 458 ntBASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC40Q4G0X9 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms