Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SF3A1Q15459 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.71■□□□□ 0.91
SF3A1Q15459 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
SF3A1Q15459 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.91
SF3A1Q15459 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SF3A1Q15459 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SF3A1Q15459 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.7■□□□□ 0.9
SF3A1Q15459 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SF3A1Q15459 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SF3A1Q15459 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.7■□□□□ 0.9
SF3A1Q15459 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SF3A1Q15459 AC010203.1-204ENST00000548782 407 ntBASIC20.7■□□□□ 0.9
SF3A1Q15459 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.7■□□□□ 0.9
SF3A1Q15459 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
SF3A1Q15459 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.7■□□□□ 0.9
SF3A1Q15459 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SF3A1Q15459 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.7■□□□□ 0.9
SF3A1Q15459 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.7■□□□□ 0.9
SF3A1Q15459 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
SF3A1Q15459 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SF3A1Q15459 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.7■□□□□ 0.9
SF3A1Q15459 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SF3A1Q15459 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SF3A1Q15459 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.69■□□□□ 0.9
SF3A1Q15459 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SF3A1Q15459 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 AC006116.8-202ENST00000587620 1550 ntBASIC20.69■□□□□ 0.9
SF3A1Q15459 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.69■□□□□ 0.9
SF3A1Q15459 AP000523.1-201ENST00000398242 1049 ntBASIC20.69■□□□□ 0.9
SF3A1Q15459 PVRIG2P-201ENST00000435460 978 ntBASIC20.69■□□□□ 0.9
SF3A1Q15459 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.69■□□□□ 0.9
SF3A1Q15459 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.69■□□□□ 0.9
SF3A1Q15459 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.69■□□□□ 0.9
SF3A1Q15459 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
SF3A1Q15459 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.69■□□□□ 0.9
SF3A1Q15459 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SF3A1Q15459 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SF3A1Q15459 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
SF3A1Q15459 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SF3A1Q15459 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3A1Q15459 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3A1Q15459 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3A1Q15459 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.68■□□□□ 0.9
SF3A1Q15459 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3A1Q15459 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SF3A1Q15459 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.68■□□□□ 0.9
SF3A1Q15459 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.68■□□□□ 0.9
SF3A1Q15459 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3A1Q15459 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.68■□□□□ 0.9
SF3A1Q15459 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.68■□□□□ 0.9
SF3A1Q15459 AL023973.1-201ENST00000624619 620 ntBASIC20.68■□□□□ 0.9
SF3A1Q15459 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.68■□□□□ 0.9
SF3A1Q15459 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3A1Q15459 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SF3A1Q15459 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SF3A1Q15459 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.68■□□□□ 0.9
SF3A1Q15459 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC20.68■□□□□ 0.9
SF3A1Q15459 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms