Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AP001059.3-201ENST00000619053 235 ntBASIC12.72□□□□□ -0.37
COL7A1Q02388 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 ESPNP-201ENST00000270691 2015 ntBASIC12.72□□□□□ -0.37
COL7A1Q02388 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
COL7A1Q02388 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC12.72□□□□□ -0.37
COL7A1Q02388 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
COL7A1Q02388 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC12.72□□□□□ -0.37
COL7A1Q02388 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC12.72□□□□□ -0.37
COL7A1Q02388 AL353135.1-201ENST00000606729 504 ntBASIC12.72□□□□□ -0.37
COL7A1Q02388 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC12.71□□□□□ -0.37
COL7A1Q02388 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC12.71□□□□□ -0.37
COL7A1Q02388 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL7A1Q02388 REM2-202ENST00000536884 1331 ntTSL 2 BASIC12.71□□□□□ -0.37
COL7A1Q02388 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL7A1Q02388 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL7A1Q02388 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL7A1Q02388 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL7A1Q02388 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL7A1Q02388 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC12.71□□□□□ -0.37
COL7A1Q02388 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC12.71□□□□□ -0.37
COL7A1Q02388 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL7A1Q02388 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC12.71□□□□□ -0.37
COL7A1Q02388 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC12.71□□□□□ -0.37
COL7A1Q02388 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
COL7A1Q02388 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
COL7A1Q02388 SP100-208ENST00000427101 1922 ntTSL 2 BASIC12.71□□□□□ -0.37
COL7A1Q02388 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL7A1Q02388 CLDN5-201ENST00000403084 2357 ntBASIC12.71□□□□□ -0.37
COL7A1Q02388 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
COL7A1Q02388 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC12.71□□□□□ -0.38
COL7A1Q02388 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL7A1Q02388 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC12.71□□□□□ -0.38
COL7A1Q02388 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL7A1Q02388 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL7A1Q02388 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC12.71□□□□□ -0.38
COL7A1Q02388 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL7A1Q02388 HNRNPA1P40-201ENST00000426371 1278 ntBASIC12.71□□□□□ -0.38
COL7A1Q02388 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL7A1Q02388 SPDYE22P-201ENST00000582158 798 ntBASIC12.71□□□□□ -0.38
COL7A1Q02388 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC12.71□□□□□ -0.38
COL7A1Q02388 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL7A1Q02388 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
COL7A1Q02388 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC12.7□□□□□ -0.38
COL7A1Q02388 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
COL7A1Q02388 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
COL7A1Q02388 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC12.7□□□□□ -0.38
COL7A1Q02388 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC12.7□□□□□ -0.38
COL7A1Q02388 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC12.7□□□□□ -0.38
COL7A1Q02388 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC12.7□□□□□ -0.38
COL7A1Q02388 AC073592.5-201ENST00000624854 528 ntBASIC12.7□□□□□ -0.38
COL7A1Q02388 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC12.7□□□□□ -0.38
COL7A1Q02388 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
COL7A1Q02388 AC100803.2-201ENST00000562459 1963 ntBASIC12.7□□□□□ -0.38
COL7A1Q02388 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC12.7□□□□□ -0.38
COL7A1Q02388 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC12.7□□□□□ -0.38
COL7A1Q02388 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 INGX-202ENST00000489074 768 ntBASIC12.7□□□□□ -0.38
COL7A1Q02388 POLD4-211ENST00000539074 714 ntTSL 3 BASIC12.7□□□□□ -0.38
COL7A1Q02388 VPS29-207ENST00000549970 818 ntTSL 3 BASIC12.7□□□□□ -0.38
COL7A1Q02388 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC12.7□□□□□ -0.38
COL7A1Q02388 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC12.7□□□□□ -0.38
COL7A1Q02388 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.7□□□□□ -0.38
COL7A1Q02388 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
COL7A1Q02388 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
COL7A1Q02388 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 FUT8-AS1-201ENST00000621019 1521 ntBASIC12.7□□□□□ -0.38
COL7A1Q02388 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
COL7A1Q02388 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC12.7□□□□□ -0.38
COL7A1Q02388 FO538757.1-201ENST00000623083 1397 ntBASIC12.7□□□□□ -0.38
COL7A1Q02388 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL7A1Q02388 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL7A1Q02388 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC12.69□□□□□ -0.38
COL7A1Q02388 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms