Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC12.82□□□□□ -0.36
PRKDCP78527 TP53TG3HP-202ENST00000569755 579 ntBASIC12.82□□□□□ -0.36
PRKDCP78527 AL162274.1-201ENST00000617191 1098 ntBASIC12.82□□□□□ -0.36
PRKDCP78527 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC12.82□□□□□ -0.36
PRKDCP78527 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
PRKDCP78527 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC12.82□□□□□ -0.36
PRKDCP78527 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 FEM1AP3-201ENST00000403722 1741 ntBASIC12.82□□□□□ -0.36
PRKDCP78527 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
PRKDCP78527 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC12.82□□□□□ -0.36
PRKDCP78527 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 PACS1-203ENST00000524815 628 ntTSL 4 BASIC12.82□□□□□ -0.36
PRKDCP78527 POLE2-203ENST00000553805 496 ntTSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 AC106886.1-201ENST00000568660 600 ntBASIC12.82□□□□□ -0.36
PRKDCP78527 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 AC084121.4-201ENST00000641598 221 ntBASIC12.82□□□□□ -0.36
PRKDCP78527 AF228730.8-201ENST00000642140 221 ntBASIC12.82□□□□□ -0.36
PRKDCP78527 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
PRKDCP78527 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 AL353593.2-201ENST00000602529 1483 ntBASIC12.82□□□□□ -0.36
PRKDCP78527 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
PRKDCP78527 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC12.81□□□□□ -0.36
PRKDCP78527 AL135744.1-201ENST00000565098 629 ntBASIC12.81□□□□□ -0.36
PRKDCP78527 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC12.81□□□□□ -0.36
PRKDCP78527 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
PRKDCP78527 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC12.81□□□□□ -0.36
PRKDCP78527 DDT-204ENST00000404092 805 ntTSL 3 BASIC12.81□□□□□ -0.36
PRKDCP78527 HLA-DPB2-205ENST00000435074 1188 ntBASIC12.81□□□□□ -0.36
PRKDCP78527 AL592309.1-201ENST00000443127 649 ntBASIC12.81□□□□□ -0.36
PRKDCP78527 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC12.81□□□□□ -0.36
PRKDCP78527 AC008687.5-201ENST00000593746 558 ntBASIC12.81□□□□□ -0.36
PRKDCP78527 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC12.81□□□□□ -0.36
PRKDCP78527 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
PRKDCP78527 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
PRKDCP78527 AL158211.5-201ENST00000623583 2518 ntBASIC12.81□□□□□ -0.36
PRKDCP78527 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC12.81□□□□□ -0.36
PRKDCP78527 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC12.81□□□□□ -0.36
PRKDCP78527 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC12.81□□□□□ -0.36
PRKDCP78527 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
PRKDCP78527 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 SPDYE11-202ENST00000450699 704 ntBASIC12.81□□□□□ -0.36
PRKDCP78527 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PRKDCP78527 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC12.81□□□□□ -0.36
PRKDCP78527 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC12.81□□□□□ -0.36
PRKDCP78527 LINC01225-203ENST00000563550 1244 ntBASIC12.81□□□□□ -0.36
PRKDCP78527 SPDYE9P-201ENST00000570642 692 ntBASIC12.81□□□□□ -0.36
PRKDCP78527 SPDYE10P-202ENST00000612005 668 ntBASIC12.81□□□□□ -0.36
PRKDCP78527 SPDYE8P-202ENST00000612377 668 ntBASIC12.81□□□□□ -0.36
PRKDCP78527 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC12.81□□□□□ -0.36
PRKDCP78527 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC12.8□□□□□ -0.36
PRKDCP78527 AL133338.1-201ENST00000565695 1517 ntBASIC12.8□□□□□ -0.36
PRKDCP78527 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC12.8□□□□□ -0.36
PRKDCP78527 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC12.8□□□□□ -0.36
PRKDCP78527 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC12.8□□□□□ -0.36
PRKDCP78527 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC12.8□□□□□ -0.36
PRKDCP78527 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC12.8□□□□□ -0.36
PRKDCP78527 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC12.8□□□□□ -0.36
PRKDCP78527 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC12.8□□□□□ -0.36
PRKDCP78527 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
PRKDCP78527 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC12.8□□□□□ -0.36
PRKDCP78527 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 AC138969.3-201ENST00000546612 1459 ntBASIC12.8□□□□□ -0.36
PRKDCP78527 AC138932.2-201ENST00000548268 1459 ntBASIC12.8□□□□□ -0.36
PRKDCP78527 AC126755.4-201ENST00000549796 1459 ntBASIC12.8□□□□□ -0.36
PRKDCP78527 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
PRKDCP78527 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms