Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
PKNOX1P55347 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.59■□□□□ 0.41
PKNOX1P55347 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.59■□□□□ 0.41
PKNOX1P55347 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.59■□□□□ 0.41
PKNOX1P55347 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.59■□□□□ 0.41
PKNOX1P55347 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.59■□□□□ 0.41
PKNOX1P55347 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PKNOX1P55347 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.59■□□□□ 0.41
PKNOX1P55347 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PKNOX1P55347 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PKNOX1P55347 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.58■□□□□ 0.41
PKNOX1P55347 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
PKNOX1P55347 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PKNOX1P55347 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PKNOX1P55347 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.58■□□□□ 0.41
PKNOX1P55347 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PKNOX1P55347 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.58■□□□□ 0.4
PKNOX1P55347 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
PKNOX1P55347 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.58■□□□□ 0.4
PKNOX1P55347 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
PKNOX1P55347 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.58■□□□□ 0.4
PKNOX1P55347 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.58■□□□□ 0.4
PKNOX1P55347 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PKNOX1P55347 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.58■□□□□ 0.4
PKNOX1P55347 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.58■□□□□ 0.4
PKNOX1P55347 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
PKNOX1P55347 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PKNOX1P55347 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.58■□□□□ 0.4
PKNOX1P55347 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.57■□□□□ 0.4
PKNOX1P55347 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.57■□□□□ 0.4
PKNOX1P55347 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.57■□□□□ 0.4
PKNOX1P55347 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.57■□□□□ 0.4
PKNOX1P55347 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.57■□□□□ 0.4
PKNOX1P55347 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PKNOX1P55347 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PKNOX1P55347 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 INGX-201ENST00000359239 846 ntBASIC17.57■□□□□ 0.4
PKNOX1P55347 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PKNOX1P55347 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.57■□□□□ 0.4
PKNOX1P55347 AC009947.2-201ENST00000444014 672 ntBASIC17.57■□□□□ 0.4
PKNOX1P55347 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.57■□□□□ 0.4
PKNOX1P55347 NAPSB-206ENST00000562112 1266 ntBASIC17.57■□□□□ 0.4
PKNOX1P55347 NEK4P2-201ENST00000580004 1012 ntBASIC17.57■□□□□ 0.4
PKNOX1P55347 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.57■□□□□ 0.4
PKNOX1P55347 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.57■□□□□ 0.4
PKNOX1P55347 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PKNOX1P55347 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.57■□□□□ 0.4
PKNOX1P55347 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
PKNOX1P55347 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PKNOX1P55347 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PKNOX1P55347 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
PKNOX1P55347 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms