Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMK1P53667 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LIMK1P53667 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMK1P53667 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LIMK1P53667 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
LIMK1P53667 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.67■□□□□ 0.42
LIMK1P53667 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 AC125634.1-201ENST00000438758 1403 ntBASIC17.67■□□□□ 0.42
LIMK1P53667 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
LIMK1P53667 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LIMK1P53667 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.67■□□□□ 0.42
LIMK1P53667 HLA-J-203ENST00000494367 1087 ntBASIC17.67■□□□□ 0.42
LIMK1P53667 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LIMK1P53667 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 MIR4469-201ENST00000583919 79 ntBASIC17.67■□□□□ 0.42
LIMK1P53667 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMK1P53667 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
LIMK1P53667 AC002310.6-201ENST00000624451 1377 ntBASIC17.66■□□□□ 0.42
LIMK1P53667 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMK1P53667 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMK1P53667 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
LIMK1P53667 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIMK1P53667 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMK1P53667 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMK1P53667 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMK1P53667 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMK1P53667 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.66■□□□□ 0.42
LIMK1P53667 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
LIMK1P53667 CNN2P11-201ENST00000429351 262 ntBASIC17.66■□□□□ 0.42
LIMK1P53667 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.66■□□□□ 0.42
LIMK1P53667 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMK1P53667 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMK1P53667 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMK1P53667 SPCS2P1-201ENST00000561636 679 ntBASIC17.66■□□□□ 0.42
LIMK1P53667 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
LIMK1P53667 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMK1P53667 NKAPP1-205ENST00000585790 367 ntBASIC17.66■□□□□ 0.42
LIMK1P53667 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMK1P53667 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
LIMK1P53667 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LIMK1P53667 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMK1P53667 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMK1P53667 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
LIMK1P53667 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMK1P53667 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
LIMK1P53667 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMK1P53667 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMK1P53667 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
LIMK1P53667 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMK1P53667 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMK1P53667 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.65■□□□□ 0.42
LIMK1P53667 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMK1P53667 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LIMK1P53667 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIMK1P53667 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMK1P53667 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
LIMK1P53667 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMK1P53667 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIMK1P53667 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMK1P53667 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
LIMK1P53667 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.64■□□□□ 0.42
LIMK1P53667 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
LIMK1P53667 KRT8P50-201ENST00000562022 1438 ntBASIC17.64■□□□□ 0.42
LIMK1P53667 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMK1P53667 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMK1P53667 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMK1P53667 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMK1P53667 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMK1P53667 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.64■□□□□ 0.41
LIMK1P53667 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
LIMK1P53667 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
LIMK1P53667 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIMK1P53667 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.64■□□□□ 0.41
LIMK1P53667 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms