Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
MSH6P52701 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
MSH6P52701 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
MSH6P52701 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC24.63■■□□□ 1.53
MSH6P52701 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
MSH6P52701 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC24.63■■□□□ 1.53
MSH6P52701 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
MSH6P52701 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC24.63■■□□□ 1.53
MSH6P52701 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
MSH6P52701 AC236430.1-201ENST00000402231 743 ntBASIC24.63■■□□□ 1.53
MSH6P52701 GAPDHP21-201ENST00000450301 1010 ntBASIC24.63■■□□□ 1.53
MSH6P52701 INGX-202ENST00000489074 768 ntBASIC24.63■■□□□ 1.53
MSH6P52701 NMU-203ENST00000507338 658 ntTSL 3 BASIC24.63■■□□□ 1.53
MSH6P52701 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC24.63■■□□□ 1.53
MSH6P52701 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
MSH6P52701 AC009093.7-201ENST00000623853 1223 ntBASIC24.63■■□□□ 1.53
MSH6P52701 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
MSH6P52701 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC24.63■■□□□ 1.53
MSH6P52701 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC24.63■■□□□ 1.53
MSH6P52701 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC24.62■■□□□ 1.53
MSH6P52701 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
MSH6P52701 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
MSH6P52701 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC24.62■■□□□ 1.53
MSH6P52701 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
MSH6P52701 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
MSH6P52701 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
MSH6P52701 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
MSH6P52701 KLF4P1-201ENST00000412782 1185 ntBASIC24.62■■□□□ 1.53
MSH6P52701 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC24.62■■□□□ 1.53
MSH6P52701 DDX43P3-201ENST00000441064 443 ntBASIC24.62■■□□□ 1.53
MSH6P52701 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC24.62■■□□□ 1.53
MSH6P52701 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC24.62■■□□□ 1.53
MSH6P52701 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC24.62■■□□□ 1.53
MSH6P52701 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
MSH6P52701 DUX4L27-201ENST00000554796 1261 ntBASIC24.62■■□□□ 1.53
MSH6P52701 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC24.62■■□□□ 1.53
MSH6P52701 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC24.62■■□□□ 1.53
MSH6P52701 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC24.62■■□□□ 1.53
MSH6P52701 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC24.62■■□□□ 1.53
MSH6P52701 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC24.62■■□□□ 1.53
MSH6P52701 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
MSH6P52701 REM2-202ENST00000536884 1331 ntTSL 2 BASIC24.62■■□□□ 1.53
MSH6P52701 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
MSH6P52701 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC24.62■■□□□ 1.53
MSH6P52701 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC24.62■■□□□ 1.53
MSH6P52701 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
MSH6P52701 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
MSH6P52701 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC24.62■■□□□ 1.53
MSH6P52701 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
MSH6P52701 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC24.61■■□□□ 1.53
MSH6P52701 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC24.61■■□□□ 1.53
MSH6P52701 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
MSH6P52701 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 AC132938.5-201ENST00000624980 1813 ntBASIC24.61■■□□□ 1.53
MSH6P52701 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
MSH6P52701 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC24.61■■□□□ 1.53
MSH6P52701 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 AC002472.2-201ENST00000442739 958 ntBASIC24.61■■□□□ 1.53
MSH6P52701 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC24.61■■□□□ 1.53
MSH6P52701 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC24.61■■□□□ 1.53
MSH6P52701 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
MSH6P52701 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
MSH6P52701 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC24.6■■□□□ 1.53
MSH6P52701 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC24.6■■□□□ 1.53
MSH6P52701 EDF1-203ENST00000371649 790 ntTSL 2 BASIC24.6■■□□□ 1.53
MSH6P52701 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
MSH6P52701 ADH5P3-201ENST00000433842 1137 ntBASIC24.6■■□□□ 1.53
MSH6P52701 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC24.6■■□□□ 1.53
MSH6P52701 NAA60-208ENST00000570819 833 ntTSL 2 BASIC24.6■■□□□ 1.53
MSH6P52701 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC24.6■■□□□ 1.53
MSH6P52701 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC24.6■■□□□ 1.53
MSH6P52701 AL353135.1-201ENST00000606729 504 ntBASIC24.6■■□□□ 1.53
MSH6P52701 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC24.6■■□□□ 1.53
MSH6P52701 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC24.6■■□□□ 1.53
MSH6P52701 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC24.6■■□□□ 1.53
MSH6P52701 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC24.6■■□□□ 1.53
MSH6P52701 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
MSH6P52701 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
MSH6P52701 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
MSH6P52701 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
MSH6P52701 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms