Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MRE11P49959 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
MRE11P49959 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.89■□□□□ 0.94
MRE11P49959 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MRE11P49959 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC20.89■□□□□ 0.93
MRE11P49959 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 AL356309.3-201ENST00000624132 1934 ntBASIC20.89■□□□□ 0.93
MRE11P49959 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
MRE11P49959 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.89■□□□□ 0.93
MRE11P49959 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.89■□□□□ 0.93
MRE11P49959 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
MRE11P49959 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.89■□□□□ 0.93
MRE11P49959 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.89■□□□□ 0.93
MRE11P49959 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.89■□□□□ 0.93
MRE11P49959 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.89■□□□□ 0.93
MRE11P49959 AL023875.1-201ENST00000640777 796 ntBASIC20.89■□□□□ 0.93
MRE11P49959 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
MRE11P49959 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
MRE11P49959 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
MRE11P49959 AL138688.1-201ENST00000624851 1594 ntBASIC20.89■□□□□ 0.93
MRE11P49959 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MRE11P49959 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 AP006587.1-201ENST00000534129 1502 ntBASIC20.88■□□□□ 0.93
MRE11P49959 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
MRE11P49959 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.88■□□□□ 0.93
MRE11P49959 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.88■□□□□ 0.93
MRE11P49959 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 CROCCP2-202ENST00000412962 2773 ntBASIC20.88■□□□□ 0.93
MRE11P49959 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
MRE11P49959 AL357033.4-201ENST00000617703 1807 ntBASIC20.88■□□□□ 0.93
MRE11P49959 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.88■□□□□ 0.93
MRE11P49959 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
MRE11P49959 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 AL355472.2-201ENST00000422958 438 ntBASIC20.88■□□□□ 0.93
MRE11P49959 AL137013.1-201ENST00000432946 1228 ntBASIC20.88■□□□□ 0.93
MRE11P49959 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.88■□□□□ 0.93
MRE11P49959 AL589743.5-201ENST00000616611 1050 ntBASIC20.88■□□□□ 0.93
MRE11P49959 AL121906.2-201ENST00000621597 723 ntBASIC20.88■□□□□ 0.93
MRE11P49959 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
MRE11P49959 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC20.88■□□□□ 0.93
MRE11P49959 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MRE11P49959 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.88■□□□□ 0.93
MRE11P49959 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC20.88■□□□□ 0.93
MRE11P49959 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
MRE11P49959 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
MRE11P49959 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
MRE11P49959 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.87■□□□□ 0.93
MRE11P49959 PCDHA1-201ENST00000378133 2726 ntBASIC20.87■□□□□ 0.93
MRE11P49959 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.87■□□□□ 0.93
MRE11P49959 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC20.87■□□□□ 0.93
MRE11P49959 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
MRE11P49959 TERF1P1-201ENST00000311003 1181 ntBASIC20.87■□□□□ 0.93
MRE11P49959 AC239809.2-201ENST00000415381 517 ntBASIC20.87■□□□□ 0.93
MRE11P49959 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.87■□□□□ 0.93
MRE11P49959 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.87■□□□□ 0.93
MRE11P49959 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 MTDHP1-201ENST00000605323 784 ntBASIC20.87■□□□□ 0.93
MRE11P49959 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.87■□□□□ 0.93
MRE11P49959 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
MRE11P49959 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.87■□□□□ 0.93
MRE11P49959 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MRE11P49959 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC20.86■□□□□ 0.93
MRE11P49959 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
MRE11P49959 ABR-203ENST00000536794 2213 ntTSL 2 BASIC20.86■□□□□ 0.93
MRE11P49959 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms