Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC14.65□□□□□ -0.06
CDX1P47902 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CDX1P47902 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CDX1P47902 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC14.65□□□□□ -0.06
CDX1P47902 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
CDX1P47902 TEX21P-204ENST00000641479 1693 ntBASIC14.65□□□□□ -0.06
CDX1P47902 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDX1P47902 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC14.65□□□□□ -0.06
CDX1P47902 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
CDX1P47902 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.64□□□□□ -0.07
CDX1P47902 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
CDX1P47902 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC14.64□□□□□ -0.07
CDX1P47902 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC14.64□□□□□ -0.07
CDX1P47902 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC14.64□□□□□ -0.07
CDX1P47902 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.64□□□□□ -0.07
CDX1P47902 TBC1D3P2-202ENST00000577902 1649 ntBASIC14.64□□□□□ -0.07
CDX1P47902 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CDX1P47902 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CDX1P47902 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
CDX1P47902 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 RNF152P1-201ENST00000397754 604 ntBASIC14.64□□□□□ -0.07
CDX1P47902 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC14.64□□□□□ -0.07
CDX1P47902 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC14.64□□□□□ -0.07
CDX1P47902 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC14.64□□□□□ -0.07
CDX1P47902 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC14.64□□□□□ -0.07
CDX1P47902 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 RMI2-205ENST00000576027 818 ntTSL 2 BASIC14.64□□□□□ -0.07
CDX1P47902 NEK4P2-201ENST00000580004 1012 ntBASIC14.64□□□□□ -0.07
CDX1P47902 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC14.64□□□□□ -0.07
CDX1P47902 AC140113.3-201ENST00000605663 199 ntBASIC14.64□□□□□ -0.07
CDX1P47902 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC14.64□□□□□ -0.07
CDX1P47902 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC14.64□□□□□ -0.07
CDX1P47902 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC14.64□□□□□ -0.07
CDX1P47902 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
CDX1P47902 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC14.64□□□□□ -0.07
CDX1P47902 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.64□□□□□ -0.07
CDX1P47902 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
CDX1P47902 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDX1P47902 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC14.64□□□□□ -0.07
CDX1P47902 FEM1AP3-201ENST00000403722 1741 ntBASIC14.63□□□□□ -0.07
CDX1P47902 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CDX1P47902 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.63□□□□□ -0.07
CDX1P47902 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 AC117947.1-201ENST00000427448 529 ntBASIC14.63□□□□□ -0.07
CDX1P47902 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CDX1P47902 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC14.63□□□□□ -0.07
CDX1P47902 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC14.63□□□□□ -0.07
CDX1P47902 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC14.63□□□□□ -0.07
CDX1P47902 AC139887.4-201ENST00000607877 719 ntBASIC14.63□□□□□ -0.07
CDX1P47902 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CDX1P47902 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC14.63□□□□□ -0.07
CDX1P47902 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 KRT8P45-201ENST00000414328 1447 ntBASIC14.63□□□□□ -0.07
CDX1P47902 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC14.63□□□□□ -0.07
CDX1P47902 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC14.63□□□□□ -0.07
CDX1P47902 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.63□□□□□ -0.07
CDX1P47902 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDX1P47902 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.63□□□□□ -0.07
CDX1P47902 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms