Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.61■■□□□ 1.05
BRCA1P38398 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 AL355306.1-201ENST00000415580 579 ntBASIC21.61■■□□□ 1.05
BRCA1P38398 AC055876.3-201ENST00000431496 288 ntBASIC21.61■■□□□ 1.05
BRCA1P38398 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.61■■□□□ 1.05
BRCA1P38398 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC21.61■■□□□ 1.05
BRCA1P38398 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC21.61■■□□□ 1.05
BRCA1P38398 AC138649.4-201ENST00000612222 287 ntBASIC21.61■■□□□ 1.05
BRCA1P38398 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC21.61■■□□□ 1.05
BRCA1P38398 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC21.61■■□□□ 1.05
BRCA1P38398 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC21.61■■□□□ 1.05
BRCA1P38398 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.61■■□□□ 1.05
BRCA1P38398 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
BRCA1P38398 CLDN5-201ENST00000403084 2357 ntBASIC21.61■■□□□ 1.05
BRCA1P38398 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
BRCA1P38398 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRCA1P38398 AC018445.3-201ENST00000624177 1945 ntBASIC21.61■■□□□ 1.05
BRCA1P38398 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21.6■■□□□ 1.05
BRCA1P38398 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
BRCA1P38398 NABP1-203ENST00000409510 843 ntTSL 5 BASIC21.6■■□□□ 1.05
BRCA1P38398 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.6■■□□□ 1.05
BRCA1P38398 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
BRCA1P38398 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.6■■□□□ 1.05
BRCA1P38398 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
BRCA1P38398 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
BRCA1P38398 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
BRCA1P38398 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
BRCA1P38398 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
BRCA1P38398 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC21.6■■□□□ 1.05
BRCA1P38398 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.6■■□□□ 1.05
BRCA1P38398 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.6■■□□□ 1.05
BRCA1P38398 GRAP-202ENST00000395635 834 ntTSL 2 BASIC21.6■■□□□ 1.05
BRCA1P38398 WRB-204ENST00000398753 699 ntTSL 3 BASIC21.6■■□□□ 1.05
BRCA1P38398 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.6■■□□□ 1.05
BRCA1P38398 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.6■■□□□ 1.05
BRCA1P38398 CNN2P2-201ENST00000443536 909 ntBASIC21.6■■□□□ 1.05
BRCA1P38398 CNN2P3-201ENST00000450201 906 ntBASIC21.6■■□□□ 1.05
BRCA1P38398 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
BRCA1P38398 NAA50-208ENST00000497255 789 ntTSL 5 BASIC21.6■■□□□ 1.05
BRCA1P38398 TERF1P3-201ENST00000505638 1227 ntBASIC21.6■■□□□ 1.05
BRCA1P38398 AP005018.1-201ENST00000525475 301 ntBASIC21.6■■□□□ 1.05
BRCA1P38398 AL136317.3-201ENST00000618497 906 ntBASIC21.6■■□□□ 1.05
BRCA1P38398 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
BRCA1P38398 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.6■■□□□ 1.05
BRCA1P38398 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
BRCA1P38398 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.59■■□□□ 1.05
BRCA1P38398 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCA1P38398 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCA1P38398 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCA1P38398 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCA1P38398 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
BRCA1P38398 PTCHD3P3-201ENST00000403073 906 ntBASIC21.59■■□□□ 1.05
BRCA1P38398 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC21.59■■□□□ 1.05
BRCA1P38398 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC21.59■■□□□ 1.05
BRCA1P38398 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC21.59■■□□□ 1.05
BRCA1P38398 AC009336.1-201ENST00000608941 1553 ntBASIC21.59■■□□□ 1.05
BRCA1P38398 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCA1P38398 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
BRCA1P38398 AL590787.1-201ENST00000568856 1315 ntBASIC21.59■■□□□ 1.05
BRCA1P38398 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCA1P38398 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRCA1P38398 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
BRCA1P38398 GMCL1P1-201ENST00000463439 1581 ntBASIC21.58■■□□□ 1.05
BRCA1P38398 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
BRCA1P38398 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
BRCA1P38398 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
BRCA1P38398 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
BRCA1P38398 GK-202ENST00000378941 458 ntTSL 3 BASIC21.58■■□□□ 1.05
BRCA1P38398 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
BRCA1P38398 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.58■■□□□ 1.05
BRCA1P38398 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC21.58■■□□□ 1.05
BRCA1P38398 AL135744.1-201ENST00000565098 629 ntBASIC21.58■■□□□ 1.05
BRCA1P38398 REXO1L3P-201ENST00000622202 1288 ntBASIC21.58■■□□□ 1.05
BRCA1P38398 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.58■■□□□ 1.05
BRCA1P38398 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC21.58■■□□□ 1.05
BRCA1P38398 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
BRCA1P38398 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.58■■□□□ 1.04
BRCA1P38398 CYP51A1P2-201ENST00000419457 1499 ntBASIC21.58■■□□□ 1.04
BRCA1P38398 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.58■■□□□ 1.04
BRCA1P38398 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
BRCA1P38398 ANO7L1-203ENST00000602586 1720 ntBASIC21.58■■□□□ 1.04
BRCA1P38398 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
BRCA1P38398 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.58■■□□□ 1.04
BRCA1P38398 AL513480.1-201ENST00000451731 511 ntBASIC21.58■■□□□ 1.04
BRCA1P38398 KLF2P3-201ENST00000451977 1087 ntBASIC21.58■■□□□ 1.04
BRCA1P38398 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC21.58■■□□□ 1.04
BRCA1P38398 STK19B-204ENST00000512515 211 ntBASIC21.58■■□□□ 1.04
BRCA1P38398 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC21.58■■□□□ 1.04
BRCA1P38398 SLC25A39P2-201ENST00000537614 270 ntBASIC21.58■■□□□ 1.04
BRCA1P38398 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC21.58■■□□□ 1.04
BRCA1P38398 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.58■■□□□ 1.04
BRCA1P38398 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms